CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH72242	Soybean	nucleus	88.13	86.34
KRH67965	Soybean	nucleus	53.12	62.15
KRG96220	Soybean	nucleus	52.82	59.53
VIT_08s0007g02810.t01	Wine grape	nucleus	46.59	55.09
CDX84162	Canola	nucleus	38.58	53.5
AT2G36080.1	Thale cress	nucleus	38.28	52.87
GSMUA_Achr9P02600_001	Banana	nucleus	30.27	52.85
CDX75073	Canola	nucleus	38.28	52.02
Bra005301.1-P	Field mustard	nucleus	37.98	51.61
CDY43751	Canola	nucleus	36.8	51.03
Bra017262.1-P	Field mustard	nucleus	37.09	51.02
GSMUA_Achr3P19210_001	Banana	nucleus	29.67	49.75
Bra001411.1-P	Field mustard	nucleus	34.42	49.15
CDX73868	Canola	nucleus	34.42	49.15
CDY62470	Canola	nucleus	32.34	47.81
CDY08512	Canola	nucleus	35.01	47.58
TraesCS5B01G126200.1	Wheat	nucleus	36.8	46.79
GSMUA_Achr6P35600_001	Banana	nucleus	33.53	46.69
CDY01036	Canola	nucleus	35.61	46.69
TraesCS5A01G127100.1	Wheat	nucleus	36.5	46.24
TraesCS5D01G134700.1	Wheat	nucleus	36.5	46.24
Bra034828.1-P	Field mustard	nucleus	35.31	46.12
KXG27771	Sorghum	nucleus	37.39	45.99
Bra041023.1-P	Field mustard	nucleus	35.91	45.83
CDY47260	Canola	nucleus	36.2	45.69
Bra005886.1-P	Field mustard	nucleus	36.2	45.69
TraesCS4A01G198300.2	Wheat	nucleus	37.39	45.16
TraesCS4B01G117100.1	Wheat	nucleus	37.39	45.16
TraesCS2A01G460700.1	Wheat	nucleus	35.61	45.11
TraesCS2D01G460900.1	Wheat	nucleus	35.61	44.94
Os11t0156000-01	Rice	nucleus	37.09	44.8
TraesCS4D01G114900.1	Wheat	nucleus	37.39	44.68
TraesCS2B01G482400.1	Wheat	nucleus	35.31	44.57
GSMUA_Achr6P13140_001	Banana	nucleus	32.64	44.53
AT5G06250.4	Thale cress	nucleus	37.39	44.37
GSMUA_Achr9P08980_001	Banana	nucleus	20.77	43.21
HORVU4Hr1G021650.22	Barley	nucleus	34.72	41.94
Solyc09g010230.1.1	Tomato	nucleus	42.73	41.74
Zm00001d023446_P001	Maize	nucleus	35.01	41.7
CDX80996	Canola	nucleus	32.94	40.36
PGSC0003DMT400023077	Potato	nucleus	39.47	39.7
HORVU5Hr1G040620.4	Barley	nucleus	32.05	39.42
GSMUA_Achr11P...	Banana	nucleus	21.36	38.92
Zm00001d052591_P001	Maize	nucleus	35.31	38.76
KXG22988	Sorghum	plastid	36.2	38.12
CDY70080	Canola	nucleus	25.52	35.98
CDX98911	Canola	nucleus	25.52	35.98
Bra009171.1-P	Field mustard	nucleus	25.22	35.56
Os12t0157000-01	Rice	cytosol, nucleus	21.36	34.29
AT3G11580.3	Thale cress	cytosol, endoplasmic reticulum, nucleus	36.8	33.42
KRG97268	Soybean	nucleus	33.53	27.36
GSMUA_Achr6P18320_001	Banana	nucleus	26.71	26.47
KRH68988	Soybean	nucleus	32.64	26.19
KRH34761	Soybean	nucleus	26.41	25.36
KRG92025	Soybean	nucleus	26.11	24.31
KRH75484	Soybean	nucleus	26.11	22.92
KRH70603	Soybean	nucleus	26.71	22.44
KRH47753	Soybean	nucleus	32.34	21.8
KRG93082	Soybean	nucleus	19.29	20.38
KRH06334	Soybean	nucleus	33.83	19.59

Protein Annotations

EntrezGene:100795470	MapMan:15.5.5.3	Gene3D:2.40.330.10	EMBL:ACUP02006167	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf
EnsemblPlantsGene:GLYMA_10G076100	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300
UniProt:K7LHY6	EnsemblPlants:KRH32791	ProteinID:KRH32791	ProteinID:KRH32791.1	PFAM:PF02362	PFscan:PS50863
PANTHER:PTHR31140	PANTHER:PTHR31140:SF2	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI0001BA6B25	SEG:seg

Description

hypothetical protein

Coordinates

chr10:-:7918148..7921127

Molecular Weight (calculated)

38496.1 Da

IEP (calculated)

6.964

GRAVY (calculated)

-1.163

Length

337 amino acids

Sequence
(BLAST)

001: MSINHYSMDL PEPTLWWPHP HHQQQQLTLM DPDPLRLNLN SDDGNGNDND NDENQTTTTG GEQEILDDKE PMFEKPLTPS DVGKLNRLVI PKQHAEKYFP
101: LSGDSGGSEC KGLLLSFEDE SGKCWRFRYS YWNSSQSYVL TKGWSRYVKD KRLDAGDVVL FERHRVDAQR LFIGWRRRRQ SDAALPPAHV SSRKSGGGDG
201: NSNKNEGWTR GFYSAHHPYP THHLHHHQPS PYQQQHDCLH AGRGSQGQNQ RMRPVGNNSS SSSSSSRVLR LFGVDMECQP EHDDSGPSTP QCSYNSNNML
301: PSTQGTDHSH HNFYQQQPSN SNPSPHHMMV HHQPYYY

Best Arabidopsis Sequence Match ( AT5G06250.5 )
(BLAST)

001: MSVNHYSTDH HHTLLWQQQQ HRHTTDTSET TTTATWLHDD LKESLFEKSL TPSDVGKLNR LVIPKQHAEK YFPLNAVLVS SAAADTSSSE KGMLLSFEDE
101: SGKSWRFRYS YWNSSQSYVL TKGWSRFVKD KQLDPGDVVF FQRHRSDSRR LFIGWRRRGQ GSSSSVAATN SAVNTSSMGA LSYHQIHATS NYSNPPSHSE
201: YSHYGAAVAT AAETHSTPSS SVVGSSRTVR LFGVNLECQM DENDGDDSVA VATTVESPDG YYGQNII

Arabidopsis Description

AP2/B3-like transcriptional factor family protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8BF34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.