Factsheet for Bra001411.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73868	Canola	nucleus	100.0	100.0
Bra041023.1-P	Field mustard	nucleus	85.17	76.14
Bra034828.1-P	Field mustard	nucleus	82.63	75.58
Bra005886.1-P	Field mustard	nucleus	61.86	54.68
AT3G11580.3	Thale cress	cytosol, endoplasmic reticulum, nucleus	82.2	52.29
Bra017262.1-P	Field mustard	nucleus	50.42	48.57
Bra005301.1-P	Field mustard	nucleus	50.0	47.58
GSMUA_Achr9P02600_001	Banana	nucleus	37.29	45.6
Bra009171.1-P	Field mustard	nucleus	45.76	45.19
GSMUA_Achr3P19210_001	Banana	nucleus	37.29	43.78
GSMUA_Achr6P35600_001	Banana	nucleus	42.8	41.74
GSMUA_Achr6P13140_001	Banana	nucleus	42.37	40.49
TraesCS5B01G126200.1	Wheat	nucleus	45.34	40.38
TraesCS5D01G134700.1	Wheat	nucleus	45.34	40.23
TraesCS5A01G127100.1	Wheat	nucleus	44.49	39.47
TraesCS2A01G460700.1	Wheat	nucleus	44.07	39.1
KXG27771	Sorghum	nucleus	44.92	38.69
TraesCS2B01G482400.1	Wheat	nucleus	43.64	38.58
TraesCS4A01G198300.2	Wheat	nucleus	45.34	38.35
TraesCS4B01G117100.1	Wheat	nucleus	44.92	37.99
TraesCS2D01G460900.1	Wheat	nucleus	42.8	37.83
HORVU4Hr1G021650.22	Barley	nucleus	44.49	37.63
TraesCS4D01G114900.1	Wheat	nucleus	44.92	37.59
GSMUA_Achr9P08980_001	Banana	nucleus	25.42	37.04
Os11t0156000-01	Rice	nucleus	43.64	36.92
VIT_08s0007g02810.t01	Wine grape	nucleus	44.49	36.84
KRH67965	Soybean	nucleus	44.92	36.81
GSMUA_Achr11P...	Banana	nucleus	28.81	36.76
HORVU5Hr1G040620.4	Barley	nucleus	41.1	35.4
KRG96220	Soybean	nucleus	44.49	35.12
Zm00001d023446_P001	Maize	nucleus	41.95	34.98
KRH32791	Soybean	nucleus	49.15	34.42
KRH72242	Soybean	nucleus	50.0	34.3
Solyc09g010230.1.1	Tomato	nucleus	49.58	33.91
Zm00001d052591_P001	Maize	nucleus	44.07	33.88
KXG22988	Sorghum	plastid	45.34	33.44
PGSC0003DMT400023077	Potato	nucleus	47.03	33.13
Bra040478.1-P	Field mustard	nucleus	38.56	31.06
Bra004501.1-P	Field mustard	nucleus	38.14	30.3
Bra000434.1-P	Field mustard	nucleus	38.56	29.35
Bra007646.1-P	Field mustard	nucleus	36.02	29.11
Bra003482.1-P	Field mustard	nucleus	34.32	28.32
Bra014415.1-P	Field mustard	nucleus	35.17	25.94
Os12t0157000-01	Rice	cytosol, nucleus	22.88	25.71
Bra033294.1-P	Field mustard	nucleus	36.02	24.71
Bra026917.1-P	Field mustard	nucleus	35.17	24.41
Bra030497.1-P	Field mustard	nucleus	36.44	24.29
Bra038346.1-P	Field mustard	nucleus, plastid	36.02	24.29
Bra019821.1-P	Field mustard	nucleus	34.75	24.05
Bra026509.1-P	Field mustard	nucleus	32.63	23.62
Bra011002.1-P	Field mustard	nucleus	35.59	23.4
Bra024735.1-P	Field mustard	nucleus	34.75	22.04
Bra037417.1-P	Field mustard	nucleus	28.81	21.94
Bra008552.1-P	Field mustard	nucleus	31.36	21.89
GSMUA_Achr6P18320_001	Banana	nucleus	30.51	21.18
Bra030458.1-P	Field mustard	nucleus	25.0	18.67
Bra030476.1-P	Field mustard	nucleus	24.58	17.85
Bra014282.1-P	Field mustard	nucleus	25.42	17.7
Bra018868.1-P	Field mustard	nucleus	25.0	17.46
Bra018894.1-P	Field mustard	nucleus	24.15	16.86
Bra018869.1-P	Field mustard	nucleus	23.31	16.47
Bra018854.1-P	Field mustard	nucleus	23.31	16.18

Protein Annotations

MapMan:15.5.5.3	Gene3D:2.40.330.10	InterPro:B3_DNA-bd	EnsemblPlantsGene:Bra001411	EnsemblPlants:Bra001411.1	EnsemblPlants:Bra001411.1-P
InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300
UniProt:M4CB32	PFAM:PF02362	PFscan:PS50863	PANTHER:PTHR31140	PANTHER:PTHR31140:SF2	SMART:SM01019
SUPFAM:SSF101936	UniParc:UPI0002540720	:	:	:	:

Description

AT3G11580 (E=2e-105) | DNA-binding protein, putative

Coordinates

chrA03:-:16247629..16248940

Molecular Weight (calculated)

26841.1 Da

IEP (calculated)

7.767

GRAVY (calculated)

-0.690

Length

236 amino acids

Sequence
(BLAST)

001: MLGNHYSRDI HHNTLSLHPH QNDTASHKES LFEKSLTPSD VGKLNRLVIP KQHAEKYLPL NNGGGEVTSE TTEKGMLLSF EDESGKCWKF RYSYWNSSQS
101: YVLTKGWSKY VKDKHLDAGD VVFFQRHRFD FHRLFIGWRR RGEASSLSAV SQEARVNTTA YWSGLTTPYR QVEASTSSYP NIHQEYSQYG AVAETPTVVA
201: GTSRTVRLFG VNLECHGDVV EPPPCSDGYN GQHIYY

Best Arabidopsis Sequence Match ( AT3G11580.3 )
(BLAST)

001: MSVNHYHNTL SLHHHHQNDV AIAQRESLFE KSLTPSDVGK LNRLVIPKQH AEKYFPLNNN NNNGGSGDDV ATTEKGMLLS FEDESGKCWK FRYSYWNSSQ
101: SYVLTKGWSR YVKDKHLDAG DVVFFQRHRF DLHRLFIGWR RRGEASSSPA VSVVSQEALV NTTAYWSGLT TPYRQVHAST TYPNIHQEYS HYGAVVDHAQ
201: SIPPVVAGSS RTVRLFGVNL ECHGDAVEPP PRPDVYNDQH IYYYSTPHPM VNIFFFYIFV RFKFLLTYDI IIKQMSWLFL ETRQMKISNF KIDLKEIFMF
301: NKLYKGGIRE NNTIHLTVKP HGQFGFYLIT LICFVYSFVS VASFCSLINI SRKYIVSCEN SLYFGFTILI C

Arabidopsis Description

AP2/B3-like transcriptional factor family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LT60]
SUBAcon: [endoplasmic reticulum,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.