Factsheet for VIT_08s0007g02810.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P02600_001	Banana	nucleus	32.98	48.7
Solyc09g010230.1.1	Tomato	nucleus	58.95	48.7
GSMUA_Achr3P19210_001	Banana	nucleus	33.68	47.76
AT2G36080.1	Thale cress	nucleus	40.7	47.54
KRH67965	Soybean	nucleus	47.72	47.22
CDY43751	Canola	nucleus	40.0	46.91
KRH32791	Soybean	nucleus	55.09	46.59
Bra017262.1-P	Field mustard	nucleus	40.0	46.53
KRG96220	Soybean	nucleus	48.42	46.15
CDX75073	Canola	nucleus	40.0	45.97
CDX84162	Canola	nucleus	38.95	45.68
Bra005301.1-P	Field mustard	nucleus	39.65	45.56
PGSC0003DMT400023077	Potato	nucleus	53.33	45.37
KRH72242	Soybean	nucleus	54.74	45.35
GSMUA_Achr6P13140_001	Banana	nucleus	39.3	45.34
CDY08512	Canola	nucleus	38.95	44.76
Bra001411.1-P	Field mustard	nucleus	36.84	44.49
CDX73868	Canola	nucleus	36.84	44.49
CDY01036	Canola	nucleus	40.0	44.36
GSMUA_Achr6P35600_001	Banana	nucleus	37.19	43.8
Bra034828.1-P	Field mustard	nucleus	39.65	43.8
Bra041023.1-P	Field mustard	nucleus	40.35	43.56
TraesCS5D01G134700.1	Wheat	nucleus	40.0	42.86
CDY47260	Canola	nucleus	40.0	42.7
Bra005886.1-P	Field mustard	nucleus	40.0	42.7
TraesCS5A01G127100.1	Wheat	nucleus	39.65	42.48
TraesCS5B01G126200.1	Wheat	nucleus	39.3	42.26
CDY62470	Canola	nucleus	33.33	41.67
KXG27771	Sorghum	nucleus	40.0	41.61
AT5G06250.4	Thale cress	nucleus	40.7	40.85
TraesCS2D01G460900.1	Wheat	nucleus	38.25	40.82
TraesCS2B01G482400.1	Wheat	nucleus	38.25	40.82
GSMUA_Achr9P08980_001	Banana	nucleus	23.16	40.74
TraesCS4B01G117100.1	Wheat	nucleus	39.65	40.5
TraesCS2A01G460700.1	Wheat	nucleus	37.54	40.23
TraesCS4A01G198300.2	Wheat	nucleus	39.3	40.14
Zm00001d023446_P001	Maize	nucleus	39.65	39.93
Os11t0156000-01	Rice	nucleus	38.6	39.43
TraesCS4D01G114900.1	Wheat	nucleus	38.6	39.01
HORVU5Hr1G040620.4	Barley	nucleus	36.14	37.59
HORVU4Hr1G021650.22	Barley	nucleus	36.14	36.92
GSMUA_Achr11P...	Banana	nucleus	23.86	36.76
CDX80996	Canola	nucleus	35.09	36.36
Zm00001d052591_P001	Maize	nucleus	37.19	34.53
KXG22988	Sorghum	plastid	38.6	34.38
CDY70080	Canola	nucleus	28.42	33.89
CDX98911	Canola	nucleus	28.42	33.89
Bra009171.1-P	Field mustard	nucleus	28.07	33.47
AT3G11580.3	Thale cress	cytosol, endoplasmic reticulum, nucleus	40.7	31.27
VIT_14s0083g00130.t01	Wine grape	nucleus	29.12	29.23
Os12t0157000-01	Rice	cytosol, nucleus	21.05	28.57
VIT_01s0011g03070.t01	Wine grape	nucleus	31.93	24.07
GSMUA_Achr6P18320_001	Banana	nucleus	28.07	23.53
VIT_02s0025g03000.t01	Wine grape	nucleus	36.49	22.81
VIT_15s0048g02370.t01	Wine grape	nucleus	34.74	21.48
VIT_11s0037g00010.t01	Wine grape	nucleus	21.05	16.81

Protein Annotations

EntrezGene:100245964	wikigene:100245964	MapMan:15.5.5.3	Gene3D:2.40.330.10	InterPro:B3_DNA-bd	ProteinID:CCB55458
ProteinID:CCB55458.1	ncoils:Coil	InterPro:DNA-bd_pseudobarrel_sf	UniProt:F6HKN6	EMBL:FN595991	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300	EntrezGene:LOC100245964	wikigene:LOC100245964
PFAM:PF02362	PFscan:PS50863	PANTHER:PTHR31140	PANTHER:PTHR31140:SF2	SMART:SM01019	SUPFAM:SSF101936
TIGR:TC59757	UniParc:UPI0001983F1C	ArrayExpress:VIT_08s0007g02810	EnsemblPlantsGene:VIT_08s0007g02810	EnsemblPlants:VIT_08s0007g02810.t01	RefSeq:XP_002275955
RefSeq:XP_002275955.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr8:+:16861710..16863847

Molecular Weight (calculated)

32261.2 Da

IEP (calculated)

5.383

GRAVY (calculated)

-0.814

Length

285 amino acids

Sequence
(BLAST)

001: MFPTRSTTPF NFNLNQDTED DEDEEVEEVA AEEEEEEVII GAERQPMFEK PLTPSDVGKL NRLVIPKQHA EKYFPLGGDS GEKGLLLSFE DECGKCWRFR
101: YSYWNSSQSY VLTKGWSRFV KEKRLDAGDV VLFQRDRSDA DRFFIGWRRR AGPAQDNPAA APPVAVHTNT GNTSVGWTRV FYSAHAYPSH PHAPPLPYQP
201: DCLHAGSVAK NQTTPVGNSK RLRLFGVNLE CQMDESEPST PDGSSLSSQG PVHHQFYPQA YSSNAYNHMD INFSRDVNQM RDHRG

Best Arabidopsis Sequence Match ( AT2G36080.1 )
(BLAST)

001: MSINQYSSDF HYHSLMWQQQ QQQQQHQNDV VEEKEALFEK PLTPSDVGKL NRLVIPKQHA ERYFPLAAAA ADAVEKGLLL CFEDEEGKPW RFRYSYWNSS
101: QSYVLTKGWS RYVKEKHLDA GDVVLFHRHR SDGGRFFIGW RRRGDSSSSS DSYRHVQSNA SLQYYPHAGA QAVESQRGNS KTLRLFGVNM ECQLDSDWSE
201: PSTPDGSNTY TTNHDQFHFY PQQQHYPPPY YMDISFTGDM NRTS

Arabidopsis Description

ARF31B3 domain-containing protein At2g36080 [Source:UniProtKB/Swiss-Prot;Acc:Q8GYJ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.