Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009171.1-P | Field mustard | nucleus | 63.73 | 75.73 |
| CDX98911 | Canola | nucleus | 63.38 | 75.31 |
| CDY70080 | Canola | nucleus | 63.38 | 75.31 |
| AT2G36080.1 | Thale cress | nucleus | 50.0 | 58.2 |
| GSMUA_Achr9P02600_001 | Banana | nucleus | 31.34 | 46.11 |
| GSMUA_Achr3P19210_001 | Banana | nucleus | 32.04 | 45.27 |
| AT3G11580.3 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 57.39 | 43.94 |
| TraesCS5D01G134700.1 | Wheat | nucleus | 40.49 | 43.23 |
| TraesCS5B01G126200.1 | Wheat | nucleus | 40.14 | 43.02 |
| GSMUA_Achr6P35600_001 | Banana | nucleus | 36.62 | 42.98 |
| TraesCS5A01G127100.1 | Wheat | nucleus | 40.14 | 42.86 |
| TraesCS2A01G460700.1 | Wheat | nucleus | 39.79 | 42.48 |
| TraesCS2B01G482400.1 | Wheat | nucleus | 39.79 | 42.32 |
| GSMUA_Achr6P13140_001 | Banana | nucleus | 36.62 | 42.11 |
| TraesCS2D01G460900.1 | Wheat | nucleus | 39.08 | 41.57 |
| KXG27771 | Sorghum | nucleus | 39.79 | 41.24 |
| VIT_08s0007g02810.t01 | Wine grape | nucleus | 40.85 | 40.7 |
| KRH67965 | Soybean | nucleus | 40.85 | 40.28 |
| GSMUA_Achr9P08980_001 | Banana | nucleus | 22.18 | 38.89 |
| KRG96220 | Soybean | nucleus | 40.85 | 38.8 |
| TraesCS4A01G198300.2 | Wheat | nucleus | 38.03 | 38.71 |
| GSMUA_Achr11P... | Banana | nucleus | 25.0 | 38.38 |
| Os11t0156000-01 | Rice | nucleus | 37.68 | 38.35 |
| TraesCS4B01G117100.1 | Wheat | nucleus | 37.68 | 38.35 |
| Zm00001d023446_P001 | Maize | nucleus | 38.03 | 38.16 |
| TraesCS4D01G114900.1 | Wheat | nucleus | 37.68 | 37.94 |
| HORVU5Hr1G040620.4 | Barley | nucleus | 36.27 | 37.59 |
| KRH32791 | Soybean | nucleus | 44.37 | 37.39 |
| KRH72242 | Soybean | nucleus | 44.72 | 36.92 |
| HORVU4Hr1G021650.22 | Barley | nucleus | 35.92 | 36.56 |
| Zm00001d052591_P001 | Maize | nucleus | 38.73 | 35.83 |
| PGSC0003DMT400023077 | Potato | nucleus | 41.9 | 35.52 |
| Solyc09g010230.1.1 | Tomato | nucleus | 42.96 | 35.36 |
| KXG22988 | Sorghum | plastid | 38.03 | 33.75 |
| AT2G46870.1 | Thale cress | nucleus | 33.8 | 30.97 |
| AT3G61970.1 | Thale cress | nucleus | 31.34 | 29.77 |
| Os12t0157000-01 | Rice | cytosol, nucleus | 19.37 | 26.19 |
| AT1G13260.1 | Thale cress | nucleus | 30.99 | 25.58 |
| AT1G68840.1 | Thale cress | nucleus | 31.34 | 25.28 |
| AT3G25730.1 | Thale cress | nucleus | 29.23 | 24.92 |
| AT1G01030.1 | Thale cress | nucleus | 31.34 | 24.86 |
| AT1G25560.1 | Thale cress | nucleus | 30.99 | 24.38 |
| AT4G01500.1 | Thale cress | nucleus | 28.52 | 24.32 |
| GSMUA_Achr6P18320_001 | Banana | nucleus | 25.0 | 20.88 |
| AT1G50680.1 | Thale cress | nucleus | 22.18 | 18.69 |
| AT1G51120.1 | Thale cress | nucleus | 22.18 | 17.9 |
Protein Annotations
| MapMan:15.5.5.3 | Gene3D:2.40.330.10 | EntrezGene:830512 | UniProt:A0A178UF66 | UniProt:A0A1P8BF34 | ProteinID:ANM70223.1 |
| ArrayExpress:AT5G06250 | EnsemblPlantsGene:AT5G06250 | RefSeq:AT5G06250 | TAIR:AT5G06250 | RefSeq:AT5G06250-TAIR-G | EnsemblPlants:AT5G06250.4 |
| InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR003340 |
| InterPro:IPR015300 | RefSeq:NP_001331852.1 | ProteinID:OAO91311.1 | PFAM:PF02362 | PFscan:PS50863 | PANTHER:PTHR31140 |
| PANTHER:PTHR31140:SF2 | SMART:SM01019 | SUPFAM:SSF101936 | UniParc:UPI0007E029B3 | SEG:seg | : |
Description
AP2/B3-like transcriptional factor family protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8BF34]
Coordinates
chr5:-:1891963..1894353
Molecular Weight (calculated)
31886.4 Da
IEP (calculated)
6.972
GRAVY (calculated)
-0.706
Length
284 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVNHYSTDH HHTLLWQQQQ HRHTTDTSET TTTATWLHDD LKESLFEKSL TPSDVGKLNR LVIPKQHAEK YFPLNAVLVS SAAADTSSSE KGMLLSFEDE
101: SGKSWRFRYS YWNSSQSYVL TKGWSRFVKD KQLDPGDVVF FQRHRSDSRR LFIGWRRRGQ GSSSSVAATN SAVNTSSMGA LSYHQIHATS NYSNPPSHSE
201: YSHYGAAVAT AAETHSTPSS SVVGSSRTVR LFGVNLECQM DENDGDDSVA VATTVESPDG YYGQNMYYYY SHPHNMNIAF TGER
101: SGKSWRFRYS YWNSSQSYVL TKGWSRFVKD KQLDPGDVVF FQRHRSDSRR LFIGWRRRGQ GSSSSVAATN SAVNTSSMGA LSYHQIHATS NYSNPPSHSE
201: YSHYGAAVAT AAETHSTPSS SVVGSSRTVR LFGVNLECQM DENDGDDSVA VATTVESPDG YYGQNMYYYY SHPHNMNIAF TGER
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.