Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX97251 | Canola | nucleus | 71.17 | 69.91 |
| Bra008552.1-P | Field mustard | nucleus | 70.87 | 69.82 |
| CDY67348 | Canola | nucleus | 30.33 | 67.33 |
| CDY07140 | Canola | nucleus | 60.66 | 66.01 |
| CDY49614 | Canola | nucleus | 60.66 | 65.16 |
| Bra037417.1-P | Field mustard | nucleus | 60.66 | 65.16 |
| CDY43060 | Canola | cytosol | 29.43 | 60.12 |
| Zm00001d035982_P001 | Maize | nucleus | 14.11 | 53.41 |
| TraesCS7A01G020800.1 | Wheat | nucleus | 24.02 | 40.4 |
| HORVU0Hr1G022200.1 | Barley | nucleus | 24.02 | 40.0 |
| TraesCS7A01G461000.1 | Wheat | nucleus | 23.42 | 40.0 |
| TraesCS7D01G448900.1 | Wheat | nucleus | 23.42 | 39.8 |
| Os06t0107800-02 | Rice | nucleus | 23.72 | 39.7 |
| TraesCS7B01G362500.1 | Wheat | nucleus | 23.12 | 39.29 |
| TraesCS4A01G472700.1 | Wheat | nucleus | 25.23 | 38.71 |
| HORVU7Hr1G002230.1 | Barley | nucleus | 25.23 | 38.18 |
| TraesCS7D01G017000.1 | Wheat | nucleus | 24.62 | 37.79 |
| TraesCS7A01G020700.1 | Wheat | nucleus | 24.32 | 37.67 |
| KXG19112 | Sorghum | nucleus | 22.52 | 36.59 |
| Zm00001d048815_P001 | Maize | nucleus | 24.92 | 35.78 |
| Zm00001d035903_P001 | Maize | nucleus | 24.02 | 35.71 |
| Zm00001d024545_P001 | Maize | nucleus | 26.13 | 34.94 |
| TraesCS1B01G215000.1 | Wheat | nucleus | 28.83 | 34.91 |
| KXG19111 | Sorghum | nucleus | 24.92 | 34.87 |
| Zm00001d024103_P001 | Maize | nucleus | 23.42 | 34.82 |
| EES13386 | Sorghum | nucleus | 26.43 | 34.78 |
| Zm00001d010077_P001 | Maize | nucleus | 27.03 | 34.75 |
| TraesCS1A01G200500.1 | Wheat | nucleus | 28.83 | 34.53 |
| GSMUA_Achr4P26430_001 | Banana | nucleus | 25.83 | 34.4 |
| EER92015 | Sorghum | nucleus | 27.93 | 33.94 |
| Zm00001d029749_P001 | Maize | nucleus | 27.63 | 33.7 |
| HORVU1Hr1G051780.2 | Barley | nucleus | 29.43 | 33.45 |
| GSMUA_Achr4P30170_001 | Banana | nucleus | 24.92 | 33.33 |
| AT2G36080.1 | Thale cress | nucleus | 24.32 | 33.2 |
| GSMUA_Achr5P12850_001 | Banana | nucleus | 21.02 | 33.18 |
| TraesCS1D01G203900.1 | Wheat | nucleus | 28.83 | 32.99 |
| GSMUA_Achr7P04630_001 | Banana | nucleus | 20.12 | 32.52 |
| Zm00001d047359_P001 | Maize | nucleus | 27.03 | 32.49 |
| AT2G46870.1 | Thale cress | nucleus | 29.13 | 31.29 |
| GSMUA_AchrUn_... | Banana | cytosol | 22.52 | 31.12 |
| AT3G61970.1 | Thale cress | nucleus | 27.93 | 31.1 |
| Os04t0581400-01 | Rice | nucleus | 27.33 | 31.06 |
| Os08t0157700-00 | Rice | nucleus | 26.73 | 31.01 |
| Os03t0120900-01 | Rice | nucleus | 28.53 | 30.55 |
| TraesCS5A01G516600.1 | Wheat | nucleus | 28.53 | 29.97 |
| HORVU7Hr1G046950.1 | Barley | nucleus | 24.62 | 29.93 |
| TraesCS4B01G348500.1 | Wheat | nucleus | 28.53 | 29.78 |
| Os10t0537100-00 | Rice | nucleus | 27.63 | 29.49 |
| GSMUA_Achr4P12210_001 | Banana | nucleus | 19.82 | 29.46 |
| GSMUA_Achr4P24970_001 | Banana | nucleus | 20.72 | 29.36 |
| OQU93364 | Sorghum | nucleus | 28.83 | 29.09 |
| HORVU4Hr1G084950.3 | Barley | nucleus | 29.73 | 29.03 |
| Zm00001d027409_P001 | Maize | nucleus | 28.23 | 28.75 |
| AT5G06250.4 | Thale cress | nucleus | 24.32 | 28.52 |
| AT1G01030.1 | Thale cress | nucleus | 30.63 | 28.49 |
| GSMUA_Achr5P20340_001 | Banana | nucleus | 28.83 | 28.49 |
| GSMUA_Achr1P03600_001 | Banana | nucleus | 27.63 | 27.88 |
| AT1G13260.1 | Thale cress | nucleus | 27.93 | 27.03 |
| AT1G68840.1 | Thale cress | nucleus | 27.93 | 26.42 |
| AT3G25730.1 | Thale cress | nucleus | 26.13 | 26.13 |
| GSMUA_Achr9P18780_001 | Banana | nucleus | 21.62 | 25.17 |
| TraesCS2A01G394700.1 | Wheat | nucleus | 30.33 | 25.0 |
| Zm00001d026005_P001 | Maize | nucleus | 30.33 | 25.0 |
| Zm00001d002562_P001 | Maize | nucleus | 30.63 | 24.94 |
| TraesCS2B01G412700.1 | Wheat | nucleus | 30.33 | 24.69 |
| TraesCS2D01G392400.1 | Wheat | nucleus | 30.33 | 24.69 |
| AT1G25560.1 | Thale cress | nucleus | 26.73 | 24.65 |
| GSMUA_Achr2P00400_001 | Banana | nucleus | 21.32 | 24.65 |
| GSMUA_Achr5P10220_001 | Banana | nucleus | 20.12 | 24.63 |
| EES12712 | Sorghum | nucleus | 30.63 | 24.29 |
| HORVU6Hr1G066190.2 | Barley | nucleus | 29.73 | 24.21 |
| TraesCS6B01G286900.1 | Wheat | nucleus | 29.73 | 24.21 |
| Os02t0683500-01 | Rice | nucleus | 29.73 | 24.03 |
| TraesCS6D01G240600.1 | Wheat | nucleus | 29.73 | 23.91 |
| TraesCS6A01G259600.1 | Wheat | nucleus | 29.73 | 23.91 |
| GSMUA_Achr2P10230_001 | Banana | nucleus | 21.32 | 23.36 |
| Zm00001d017618_P001 | Maize | nucleus | 28.53 | 22.51 |
| AT3G11580.3 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 24.92 | 22.37 |
| Zm00001d051471_P001 | Maize | nucleus | 27.93 | 22.14 |
| EES07445 | Sorghum | nucleus | 28.83 | 22.12 |
| AT1G51120.1 | Thale cress | nucleus | 18.62 | 17.61 |
| AT1G50680.1 | Thale cress | nucleus | 17.72 | 17.51 |
Protein Annotations
| MapMan:15.5.5.3 | Gene3D:2.40.330.10 | EntrezGene:826750 | UniProt:A0A178V2Z9 | ProteinID:AAC62776.1 | EMBL:AB493670 |
| ProteinID:AEE82033.1 | ArrayExpress:AT4G01500 | EnsemblPlantsGene:AT4G01500 | RefSeq:AT4G01500 | TAIR:AT4G01500 | RefSeq:AT4G01500-TAIR-G |
| EnsemblPlants:AT4G01500.1 | TAIR:AT4G01500.1 | Unigene:At.34418 | InterPro:B3_DNA-bd | EMBL:BT029520 | ProteinID:CAB77720.1 |
| InterPro:DNA-bd_pseudobarrel_sf | EMBL:FJ873734 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009653 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 |
| GO:GO:0048366 | GO:GO:1901371 | InterPro:IPR003340 | InterPro:IPR015300 | Symbol:NGA4 | RefSeq:NP_192059.4 |
| UniProt:O82595 | ProteinID:OAP00710.1 | PFAM:PF02362 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0004507 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0025022 | PFscan:PS50863 | PANTHER:PTHR31140 | PANTHER:PTHR31140:SF4 | SMART:SM01019 | SUPFAM:SSF101936 |
| UniParc:UPI0001A7B0A0 | SEG:seg | : | : | : | : |
Description
NGA4NGA4 [Source:UniProtKB/TrEMBL;Acc:A0A178V2Z9]
Coordinates
chr4:+:639247..640976
Molecular Weight (calculated)
38513.8 Da
IEP (calculated)
8.530
GRAVY (calculated)
-0.823
Length
333 amino acids
Sequence
(BLAST)
(BLAST)
001: MNISTMNLDQ ELAEIRASSS DHTNYFYSSE RREHMFDKVL TPSDVGKLNR LVIPKQHAEN FFPLEDNQNG TVLDFQDKNG KMWRFRYSYW NSSQSYVMTK
101: GWSRFVKEKK LFAGDTVSFY RGYIPDDNAQ PERRRKIMFI DWRPRAEINF VHNINNHNFV FGSPTYPTAR FYPVTPEYSM PYRSFPPFYQ NQFQEREYLG
201: YGYGRVVNGN GVRYYAGSPL DQHHQWNLGR SEPLVYDSVP VFPAGRVPPS APPQPSTTKK LRLFGVDVEE SSSSGDTRGE MGVAGYSSSS PVVIRDDDQS
301: FWRSPRGEMA SSSSAMQLSD DEEYKRKGKS LEL
101: GWSRFVKEKK LFAGDTVSFY RGYIPDDNAQ PERRRKIMFI DWRPRAEINF VHNINNHNFV FGSPTYPTAR FYPVTPEYSM PYRSFPPFYQ NQFQEREYLG
201: YGYGRVVNGN GVRYYAGSPL DQHHQWNLGR SEPLVYDSVP VFPAGRVPPS APPQPSTTKK LRLFGVDVEE SSSSGDTRGE MGVAGYSSSS PVVIRDDDQS
301: FWRSPRGEMA SSSSAMQLSD DEEYKRKGKS LEL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.