Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90001 | Canola | nucleus | 87.99 | 91.57 |
| Bra033294.1-P | Field mustard | nucleus | 87.15 | 90.7 |
| CDY15208 | Canola | nucleus | 78.49 | 87.27 |
| Bra030497.1-P | Field mustard | nucleus | 84.92 | 85.88 |
| Zm00001d035982_P001 | Maize | nucleus | 14.53 | 59.09 |
| AT2G46870.1 | Thale cress | nucleus | 39.66 | 45.81 |
| GSMUA_Achr4P30170_001 | Banana | nucleus | 31.84 | 45.78 |
| GSMUA_Achr4P26430_001 | Banana | nucleus | 31.84 | 45.6 |
| AT3G61970.1 | Thale cress | nucleus | 37.71 | 45.15 |
| Zm00001d048815_P001 | Maize | nucleus | 28.21 | 43.53 |
| Os03t0120900-01 | Rice | nucleus | 37.15 | 42.77 |
| TraesCS5A01G516600.1 | Wheat | nucleus | 37.43 | 42.27 |
| Zm00001d010077_P001 | Maize | nucleus | 30.45 | 42.08 |
| Zm00001d029749_P001 | Maize | nucleus | 31.84 | 41.76 |
| TraesCS4B01G348500.1 | Wheat | nucleus | 37.15 | 41.69 |
| EER92015 | Sorghum | nucleus | 31.84 | 41.61 |
| Zm00001d047359_P001 | Maize | nucleus | 32.12 | 41.52 |
| Zm00001d027409_P001 | Maize | nucleus | 37.71 | 41.28 |
| GSMUA_Achr5P12850_001 | Banana | nucleus | 24.3 | 41.23 |
| TraesCS1A01G200500.1 | Wheat | nucleus | 31.84 | 41.01 |
| TraesCS1B01G215000.1 | Wheat | nucleus | 31.28 | 40.73 |
| TraesCS7A01G020800.1 | Wheat | nucleus | 22.35 | 40.4 |
| OQU93364 | Sorghum | nucleus | 37.15 | 40.3 |
| GSMUA_Achr7P04630_001 | Banana | nucleus | 23.18 | 40.29 |
| TraesCS7A01G461000.1 | Wheat | nucleus | 21.79 | 40.0 |
| Os10t0537100-00 | Rice | nucleus | 34.64 | 39.74 |
| TraesCS7D01G448900.1 | Wheat | nucleus | 21.51 | 39.29 |
| HORVU0Hr1G022200.1 | Barley | nucleus | 21.79 | 39.0 |
| TraesCS7B01G362500.1 | Wheat | nucleus | 21.23 | 38.78 |
| GSMUA_Achr4P24970_001 | Banana | nucleus | 25.42 | 38.72 |
| HORVU4Hr1G084950.3 | Barley | nucleus | 36.87 | 38.71 |
| Os06t0107800-02 | Rice | nucleus | 21.51 | 38.69 |
| KXG19112 | Sorghum | nucleus | 22.07 | 38.54 |
| TraesCS1D01G203900.1 | Wheat | nucleus | 31.28 | 38.49 |
| TraesCS4A01G472700.1 | Wheat | nucleus | 23.18 | 38.25 |
| HORVU1Hr1G051780.2 | Barley | nucleus | 31.28 | 38.23 |
| AT2G36080.1 | Thale cress | nucleus | 25.98 | 38.11 |
| GSMUA_Achr1P03600_001 | Banana | nucleus | 34.92 | 37.88 |
| TraesCS7A01G020700.1 | Wheat | nucleus | 22.63 | 37.67 |
| HORVU7Hr1G046950.1 | Barley | nucleus | 28.77 | 37.59 |
| Zm00001d024103_P001 | Maize | nucleus | 23.46 | 37.5 |
| Zm00001d035903_P001 | Maize | nucleus | 23.46 | 37.5 |
| TraesCS7D01G017000.1 | Wheat | nucleus | 22.63 | 37.33 |
| HORVU7Hr1G002230.1 | Barley | nucleus | 22.63 | 36.82 |
| GSMUA_Achr4P12210_001 | Banana | nucleus | 22.91 | 36.61 |
| GSMUA_Achr5P10220_001 | Banana | nucleus | 27.37 | 36.03 |
| GSMUA_AchrUn_... | Banana | cytosol | 24.02 | 35.68 |
| GSMUA_Achr9P18780_001 | Banana | nucleus | 27.93 | 34.97 |
| Os04t0581400-01 | Rice | nucleus | 28.49 | 34.81 |
| KXG19111 | Sorghum | nucleus | 22.91 | 34.45 |
| EES13386 | Sorghum | nucleus | 24.3 | 34.39 |
| GSMUA_Achr2P00400_001 | Banana | nucleus | 27.65 | 34.38 |
| Zm00001d024545_P001 | Maize | nucleus | 23.74 | 34.14 |
| GSMUA_Achr2P10230_001 | Banana | nucleus | 28.21 | 33.22 |
| Os02t0683500-01 | Rice | nucleus | 37.15 | 32.28 |
| TraesCS2A01G394700.1 | Wheat | nucleus | 36.31 | 32.18 |
| TraesCS2D01G392400.1 | Wheat | nucleus | 36.59 | 32.03 |
| TraesCS2B01G412700.1 | Wheat | nucleus | 36.59 | 32.03 |
| TraesCS6B01G286900.1 | Wheat | nucleus | 36.31 | 31.78 |
| TraesCS6A01G259600.1 | Wheat | nucleus | 36.59 | 31.64 |
| AT5G06250.4 | Thale cress | nucleus | 24.86 | 31.34 |
| HORVU6Hr1G066190.2 | Barley | nucleus | 35.75 | 31.3 |
| TraesCS6D01G240600.1 | Wheat | nucleus | 36.03 | 31.16 |
| EES12712 | Sorghum | nucleus | 36.31 | 30.95 |
| Zm00001d002562_P001 | Maize | nucleus | 35.2 | 30.81 |
| Zm00001d026005_P001 | Maize | nucleus | 34.64 | 30.69 |
| Os08t0157700-00 | Rice | nucleus | 24.58 | 30.66 |
| AT4G01500.1 | Thale cress | nucleus | 28.49 | 30.63 |
| GSMUA_Achr5P20340_001 | Banana | nucleus | 28.77 | 30.56 |
| Zm00001d051471_P001 | Maize | nucleus | 34.92 | 29.76 |
| Zm00001d017618_P001 | Maize | nucleus | 34.92 | 29.62 |
| EES07445 | Sorghum | nucleus | 35.2 | 29.03 |
| AT1G13260.1 | Thale cress | nucleus | 25.98 | 27.03 |
| AT1G68840.1 | Thale cress | nucleus | 25.7 | 26.14 |
| AT3G25730.1 | Thale cress | nucleus | 23.46 | 25.23 |
| AT1G25560.1 | Thale cress | nucleus | 25.42 | 25.21 |
| AT3G11580.3 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 24.02 | 23.18 |
| AT1G50680.1 | Thale cress | nucleus | 16.76 | 17.8 |
| AT1G51120.1 | Thale cress | nucleus | 16.76 | 17.05 |
Protein Annotations
| MapMan:15.5.5.3 | Gene3D:2.40.330.10 | EntrezGene:839321 | UniProt:A0A178W3T3 | ProteinID:AAF26476.1 | ProteinID:AEE27219.1 |
| ArrayExpress:AT1G01030 | EnsemblPlantsGene:AT1G01030 | RefSeq:AT1G01030 | TAIR:AT1G01030 | RefSeq:AT1G01030-TAIR-G | EnsemblPlants:AT1G01030.1 |
| TAIR:AT1G01030.1 | Unigene:At.49492 | InterPro:B3_DNA-bd | EMBL:BX814729 | UniProt:C3VMM4 | InterPro:DNA-bd_pseudobarrel_sf |
| EMBL:FJ873733 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009653 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0048366 | GO:GO:1901371 |
| InterPro:IPR003340 | InterPro:IPR015300 | Symbol:NGA3 | RefSeq:NP_171611.1 | ProteinID:OAP13127.1 | PFAM:PF02362 |
| PO:PO:0000293 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0025022 | PFscan:PS50863 | PANTHER:PTHR31140 |
| PANTHER:PTHR31140:SF4 | UniProt:Q9MAN1 | SMART:SM01019 | SUPFAM:SSF101936 | UniParc:UPI00000A483A | SEG:seg |
Description
NGA3NGA3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3T3]
Coordinates
chr1:-:11649..13714
Molecular Weight (calculated)
40289.7 Da
IEP (calculated)
6.244
GRAVY (calculated)
-0.816
Length
358 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLSLAPTTT TSSDQEQDRD QELTSNIGAS SSSGPSGNNN NLPMMMIPPP EKEHMFDKVV TPSDVGKLNR LVIPKQHAER YFPLDSSNNQ NGTLLNFQDR
101: NGKMWRFRYS YWNSSQSYVM TKGWSRFVKE KKLDAGDIVS FQRGIGDESE RSKLYIDWRH RPDMSLVQAH QFGNFGFNFN FPTTSQYSNR FHPLPEYNSV
201: PIHRGLNIGN HQRSYYNTQR QEFVGYGYGN LAGRCYYTGS PLDHRNIVGS EPLVIDSVPV VPGRLTPVML PPLPPPPSTA GKRLRLFGVN MECGNDYNQQ
301: EESWLVPRGE IGASSSSSSA LRLNLSTDHD DDNDDGDDGD DDQFAKKGKS SLSLNFNP
101: NGKMWRFRYS YWNSSQSYVM TKGWSRFVKE KKLDAGDIVS FQRGIGDESE RSKLYIDWRH RPDMSLVQAH QFGNFGFNFN FPTTSQYSNR FHPLPEYNSV
201: PIHRGLNIGN HQRSYYNTQR QEFVGYGYGN LAGRCYYTGS PLDHRNIVGS EPLVIDSVPV VPGRLTPVML PPLPPPPSTA GKRLRLFGVN MECGNDYNQQ
301: EESWLVPRGE IGASSSSSSA LRLNLSTDHD DDNDDGDDGD DDQFAKKGKS SLSLNFNP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.