Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU93364 | Sorghum | nucleus | 72.99 | 68.79 |
| Zm00001d027409_P001 | Maize | nucleus | 69.13 | 65.75 |
| TraesCS5A01G516600.1 | Wheat | nucleus | 66.24 | 64.98 |
| TraesCS4B01G348500.1 | Wheat | nucleus | 66.24 | 64.58 |
| Zm00001d048815_P001 | Maize | nucleus | 45.66 | 61.21 |
| HORVU4Hr1G084950.3 | Barley | nucleus | 65.27 | 59.53 |
| Zm00001d010077_P001 | Maize | nucleus | 48.23 | 57.92 |
| Os10t0537100-00 | Rice | nucleus | 54.66 | 54.49 |
| HORVU7Hr1G046950.1 | Barley | nucleus | 47.59 | 54.01 |
| GSMUA_Achr4P30170_001 | Banana | nucleus | 38.91 | 48.59 |
| GSMUA_Achr4P26430_001 | Banana | nucleus | 38.91 | 48.4 |
| CDY67348 | Canola | nucleus | 23.15 | 48.0 |
| GSMUA_Achr5P12850_001 | Banana | nucleus | 31.19 | 45.97 |
| GSMUA_Achr1P03600_001 | Banana | nucleus | 47.91 | 45.15 |
| Os06t0107800-02 | Rice | nucleus | 28.3 | 44.22 |
| Bra040478.1-P | Field mustard | nucleus | 41.48 | 44.03 |
| CDY43060 | Canola | cytosol | 22.51 | 42.94 |
| CDY48008 | Canola | nucleus | 41.8 | 42.76 |
| Bra004501.1-P | Field mustard | nucleus | 40.84 | 42.76 |
| CDX80053 | Canola | nucleus | 40.84 | 42.76 |
| CDY41564 | Canola | nucleus | 40.84 | 42.76 |
| Os04t0581400-01 | Rice | nucleus | 40.19 | 42.66 |
| CDY69432 | Canola | nucleus | 37.94 | 42.45 |
| CDY27515 | Canola | nucleus | 41.48 | 42.43 |
| Solyc08g013700.1.1 | Tomato | nucleus | 39.87 | 42.18 |
| CDX67872 | Canola | nucleus | 38.26 | 41.75 |
| Bra003482.1-P | Field mustard | nucleus | 38.26 | 41.61 |
| PGSC0003DMT400015010 | Potato | nucleus | 39.87 | 41.33 |
| AT2G46870.1 | Thale cress | nucleus | 41.16 | 41.29 |
| CDY50908 | Canola | nucleus | 41.8 | 41.27 |
| CDX83351 | Canola | nucleus | 40.51 | 40.91 |
| GSMUA_Achr4P24970_001 | Banana | nucleus | 30.87 | 40.85 |
| CDY11388 | Canola | nucleus | 38.26 | 40.75 |
| CDX76605 | Canola | nucleus | 38.26 | 40.75 |
| Bra007646.1-P | Field mustard | nucleus | 38.26 | 40.75 |
| Bra000434.1-P | Field mustard | nucleus | 40.51 | 40.65 |
| Os02t0683500-01 | Rice | nucleus | 53.7 | 40.53 |
| AT3G61970.1 | Thale cress | nucleus | 38.91 | 40.47 |
| PGSC0003DMT400015011 | Potato | nucleus | 40.51 | 40.26 |
| Solyc08g013690.1.1 | Tomato | nucleus | 41.8 | 40.12 |
| GSMUA_Achr2P00400_001 | Banana | nucleus | 36.01 | 38.89 |
| CDY58763 | Canola | nucleus | 39.55 | 38.68 |
| Bra014415.1-P | Field mustard | nucleus | 39.55 | 38.44 |
| CDY58764 | Canola | nucleus | 39.55 | 38.44 |
| CDX90001 | Canola | nucleus | 42.12 | 38.08 |
| CDY15208 | Canola | nucleus | 39.23 | 37.89 |
| Bra033294.1-P | Field mustard | nucleus | 41.48 | 37.5 |
| GSMUA_Achr5P10220_001 | Banana | nucleus | 32.8 | 37.5 |
| GSMUA_Achr9P18780_001 | Banana | nucleus | 34.41 | 37.41 |
| AT1G01030.1 | Thale cress | nucleus | 42.77 | 37.15 |
| Bra030497.1-P | Field mustard | nucleus | 42.12 | 37.01 |
| Solyc08g083400.2.1 | Tomato | nucleus | 39.55 | 36.83 |
| Os11t0156000-01 | Rice | nucleus | 32.8 | 36.56 |
| GSMUA_Achr2P10230_001 | Banana | nucleus | 35.69 | 36.51 |
| PGSC0003DMT400031863 | Potato | nucleus | 45.02 | 34.48 |
| GSMUA_Achr5P20340_001 | Banana | nucleus | 36.66 | 33.83 |
| KRG97268 | Soybean | nucleus | 42.44 | 31.96 |
| Os08t0157700-00 | Rice | nucleus | 29.26 | 31.71 |
| VIT_15s0048g02370.t01 | Wine grape | nucleus | 46.95 | 31.67 |
| VIT_02s0025g03000.t01 | Wine grape | nucleus | 46.3 | 31.58 |
| KRH68988 | Soybean | nucleus | 41.8 | 30.95 |
| AT4G01500.1 | Thale cress | nucleus | 30.55 | 28.53 |
| CDX97251 | Canola | nucleus | 30.87 | 28.32 |
| Bra008552.1-P | Field mustard | nucleus | 30.55 | 28.11 |
| CDY07140 | Canola | nucleus | 27.01 | 27.45 |
| KRH47753 | Soybean | nucleus | 43.73 | 27.2 |
| CDY49614 | Canola | nucleus | 27.01 | 27.1 |
| Bra037417.1-P | Field mustard | nucleus | 27.01 | 27.1 |
| Os05t0549800-01 | Rice | nucleus | 28.94 | 26.24 |
| Os01t0140700-00 | Rice | nucleus | 26.05 | 25.55 |
| Os02t0455800-01 | Rice | nucleus | 21.54 | 25.09 |
| Os12t0157000-01 | Rice | cytosol, nucleus | 16.72 | 24.76 |
| Os02t0455900-00 | Rice | nucleus | 21.22 | 24.26 |
| Os01t0693400-01 | Rice | nucleus | 30.55 | 24.17 |
| Os02t0764100-01 | Rice | mitochondrion | 19.29 | 23.72 |
| Os01t0141000-01 | Rice | nucleus, plastid | 27.65 | 23.56 |
| KRH06334 | Soybean | nucleus | 43.41 | 23.2 |
Protein Annotations
| MapMan:15.5.5.3 | Gene3D:2.40.330.10 | EntrezGene:4331436 | ProteinID:AAM52315.1 | ProteinID:ABF93697.1 | EMBL:AK106367 |
| InterPro:B3_DNA-bd | ProteinID:BAF10706.1 | ProteinID:BAS82026.1 | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:IPR003340 | InterPro:IPR015300 | EnsemblPlantsGene:Os03g0120900 | EnsemblPlants:Os03t0120900-01 | PFAM:PF02362 |
| PFscan:PS50863 | PANTHER:PTHR31140 | PANTHER:PTHR31140:SF4 | UniProt:Q8LMR9 | SMART:SM01019 | SUPFAM:SSF101936 |
| UniParc:UPI00000A2C32 | RefSeq:XP_015628752.1 | SEG:seg | : | : | : |
Description
Similar to AP2 domain containing protein RAP2.8 (Fragment). (Os03t0120900-01)
Coordinates
chr3:+:1152918..1154697
Molecular Weight (calculated)
33773.9 Da
IEP (calculated)
10.288
GRAVY (calculated)
-0.412
Length
311 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFITPIVRP ASAAAGGGEV QESGGRSLAA VEKEHMFDKV VTPSDVGKLN RLVIPKQHAE KYFPLDAASN EKGLLLSFED RTGKPWRFRY SYWNSSQSYV
101: MTKGWSRFVK EKRLDAGDTV SFGRGVGEAA RGRLFIDWRR RPDVVAALQP PTHRFAHHLP SSIPFAPWAH HHGHGAAAAA AAAAGARFLL PPSSTPIYDH
201: HRRHAHAVGY DAYAAATSRQ VLFYRPLPPQ QQHHPAVVLE SVPVRMTAGH AEPPSAPSKR VRLFGVNLDC ANSEQDHAGV VGKTAPPPLP SPPSSSSSSS
301: GKARCSLNLD L
101: MTKGWSRFVK EKRLDAGDTV SFGRGVGEAA RGRLFIDWRR RPDVVAALQP PTHRFAHHLP SSIPFAPWAH HHGHGAAAAA AAAAGARFLL PPSSTPIYDH
201: HRRHAHAVGY DAYAAATSRQ VLFYRPLPPQ QQHHPAVVLE SVPVRMTAGH AEPPSAPSKR VRLFGVNLDC ANSEQDHAGV VGKTAPPPLP SPPSSSSSSS
301: GKARCSLNLD L
001: MMTDLSLTRD EDEEEAKPLA EEEGAREVAD REHMFDKVVT PSDVGKLNRL VIPKQHAERF FPLDSSSNEK GLLLNFEDLT GKSWRFRYSY WNSSQSYVMT
101: KGWSRFVKDK KLDAGDIVSF QRCVGDSGRD SRLFIDWRRR PKVPDHPHFA AGAMFPRFYS FPSTNYSLYN HQQQRHHHSG GGYNYHQIPR EFGYGYFVRS
201: VDQRNNPAAA VADPLVIESV PVMMHGRANQ ELVGTAGKRL RLFGVDMECG ESGMTNSTEE ESSSSGGSLP RGGGGGASSS SFFQLRLGSS SEDDHFTKKG
301: KSSLSFDLDQ
101: KGWSRFVKDK KLDAGDIVSF QRCVGDSGRD SRLFIDWRRR PKVPDHPHFA AGAMFPRFYS FPSTNYSLYN HQQQRHHHSG GGYNYHQIPR EFGYGYFVRS
201: VDQRNNPAAA VADPLVIESV PVMMHGRANQ ELVGTAGKRL RLFGVDMECG ESGMTNSTEE ESSSSGGSLP RGGGGGASSS SFFQLRLGSS SEDDHFTKKG
301: KSSLSFDLDQ
Arabidopsis Description
NGA1B3 domain-containing transcription factor NGA1 [Source:UniProtKB/Swiss-Prot;Acc:O82799]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.