Factsheet for Os02t0764100-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU77426	Sorghum	nucleus	26.09	40.99
Os06t0107800-02	Rice	nucleus	22.92	29.15
Os01t0141000-01	Rice	nucleus, plastid	32.81	22.74
TraesCS4B01G325600.1	Wheat	nucleus	26.88	22.08
TraesCS4D01G322500.1	Wheat	nucleus	26.48	21.97
Os11t0156000-01	Rice	nucleus	24.11	21.86
Os01t0140700-00	Rice	nucleus	27.27	21.77
TraesCS3A01G053900.1	Wheat	nucleus	27.27	21.56
TraesCSU01G179500.1	Wheat	nucleus	26.88	21.25
HORVU3Hr1G010100.2	Barley	nucleus	26.48	20.94
Os10t0537100-00	Rice	nucleus	24.11	19.55
Os03t0120900-01	Rice	nucleus	23.72	19.29
Os08t0157700-00	Rice	nucleus	21.74	19.16
HORVU3Hr1G010060.1	Barley	nucleus	26.48	19.03
Os05t0549800-01	Rice	nucleus	25.69	18.95
Os04t0581400-01	Rice	nucleus	21.74	18.77
Os01t0693400-01	Rice	nucleus	26.48	17.05
Os02t0455800-01	Rice	nucleus	17.79	16.85
Os02t0683500-01	Rice	nucleus	25.3	15.53
Os02t0455900-00	Rice	nucleus	16.21	15.07
Os12t0157000-01	Rice	cytosol, nucleus	11.07	13.33

Protein Annotations

MapMan:15.5.5.3	Gene3D:2.40.330.10	UniProt:A0A0P0VQ12	InterPro:B3_DNA-bd	ProteinID:BAS81053.1	InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008107	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016740	GO:GO:0036065	GO:GO:0042546	InterPro:IPR003340	InterPro:IPR015300	EnsemblPlantsGene:Os02g0764100
EnsemblPlants:Os02t0764100-01	PFAM:PF02362	PFscan:PS50863	PANTHER:PTHR31140	PANTHER:PTHR31140:SF9	SUPFAM:SSF101936
UniParc:UPI0000DF0884	SEG:seg	:	:	:	:

Description

Similar to DNA-binding protein RAV1. (Os02t0764100-01)

Coordinates

chr2:+:32189251..32190049

Molecular Weight (calculated)

27451.0 Da

IEP (calculated)

11.684

GRAVY (calculated)

-0.500

Length

253 amino acids

Sequence
(BLAST)

001: FSPPFLFPVR TPRRQRRPGA GVATATAPPP ALSPSWPTIA QAPPGAPPGA RHGRPRAAHA VVGAGATVRE GRDAQRRRQA QPPAGAQAAR GEALPAAADE
101: LRRLRHRRRG HLQLCKGVLL NFEDGEGKVW RFRYSCWNSS QSYVLTKGWS RFVREKGLRA GDTIVFSGSA YGPDKLLFID CKKNNTAAAT GDEKPITSGE
201: ATRVVRLFGM DITGGGGDCR KRERAVEMGQ EAFLMKRQCV VHQRTPALGA LLL

Best Arabidopsis Sequence Match ( AT1G13260.1 )
(BLAST)

001: MESSSVDEST TSTGSICETP AITPAKKSSV GNLYRMGSGS SVVLDSENGV EAESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEDEAARAYD
101: VAVHRFRRRD AVTNFKDVKM DEDEVDFLNS HSKSEIVDML RKHTYNEELE QSKRRRNGNG NMTRTLLTSG LSNDGVSTTG FRSAEALFEK AVTPSDVGKL
201: NRLVIPKHHA EKHFPLPSSN VSVKGVLLNF EDVNGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKNLRAGD VVSFSRSNGQ DQQLYIGWKS RSGSDLDAGR
301: VLRLFGVNIS PESSRNDVVG NKRVNDTEML SLVCSKKQRI FHAS

Arabidopsis Description

RAV1AP2/ERF and B3 domain-containing transcription factor RAV1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZWM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.