Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX80053 | Canola | nucleus | 98.99 | 98.99 |
| CDY48008 | Canola | nucleus | 87.21 | 85.2 |
| CDY50908 | Canola | nucleus | 89.9 | 84.76 |
| CDY27515 | Canola | nucleus | 86.53 | 84.54 |
| CDX83351 | Canola | nucleus | 87.21 | 84.09 |
| AT2G46870.1 | Thale cress | nucleus | 83.17 | 79.68 |
| CDX76605 | Canola | nucleus | 60.94 | 61.99 |
| CDY11388 | Canola | nucleus | 60.94 | 61.99 |
| Zm00001d035982_P001 | Maize | nucleus | 17.85 | 60.23 |
| CDX67872 | Canola | nucleus | 57.58 | 60.0 |
| CDY69432 | Canola | nucleus | 55.56 | 59.35 |
| CDY58763 | Canola | nucleus | 59.26 | 55.35 |
| CDY58764 | Canola | nucleus | 58.92 | 54.69 |
| CDY67348 | Canola | nucleus | 24.58 | 48.67 |
| TraesCS7A01G020800.1 | Wheat | nucleus | 29.63 | 44.44 |
| TraesCS7A01G461000.1 | Wheat | nucleus | 28.62 | 43.59 |
| CDY43060 | Canola | cytosol | 23.57 | 42.94 |
| TraesCS7D01G448900.1 | Wheat | nucleus | 28.28 | 42.86 |
| Os06t0107800-02 | Rice | nucleus | 28.62 | 42.71 |
| Zm00001d048815_P001 | Maize | nucleus | 33.33 | 42.67 |
| GSMUA_Achr4P30170_001 | Banana | nucleus | 35.69 | 42.57 |
| TraesCS7B01G362500.1 | Wheat | nucleus | 27.95 | 42.35 |
| HORVU0Hr1G022200.1 | Barley | nucleus | 28.28 | 42.0 |
| GSMUA_Achr4P26430_001 | Banana | nucleus | 35.02 | 41.6 |
| TraesCS4A01G472700.1 | Wheat | nucleus | 30.3 | 41.47 |
| TraesCS7A01G020700.1 | Wheat | nucleus | 29.63 | 40.93 |
| Os03t0120900-01 | Rice | nucleus | 42.76 | 40.84 |
| TraesCS4B01G348500.1 | Wheat | nucleus | 43.77 | 40.75 |
| CDY15208 | Canola | nucleus | 44.11 | 40.68 |
| TraesCS7D01G017000.1 | Wheat | nucleus | 29.63 | 40.55 |
| Zm00001d010077_P001 | Maize | nucleus | 35.35 | 40.54 |
| CDX90001 | Canola | nucleus | 46.8 | 40.41 |
| TraesCS5A01G516600.1 | Wheat | nucleus | 43.1 | 40.38 |
| KXG19112 | Sorghum | nucleus | 27.61 | 40.0 |
| Zm00001d029749_P001 | Maize | nucleus | 36.7 | 39.93 |
| EER92015 | Sorghum | nucleus | 36.7 | 39.78 |
| Zm00001d035903_P001 | Maize | nucleus | 29.97 | 39.73 |
| Zm00001d047359_P001 | Maize | nucleus | 37.04 | 39.71 |
| TraesCS1B01G215000.1 | Wheat | nucleus | 36.7 | 39.64 |
| HORVU7Hr1G002230.1 | Barley | nucleus | 29.29 | 39.55 |
| Zm00001d024103_P001 | Maize | nucleus | 29.63 | 39.29 |
| TraesCS1A01G200500.1 | Wheat | nucleus | 36.7 | 39.21 |
| OQU93364 | Sorghum | nucleus | 43.1 | 38.79 |
| GSMUA_Achr5P12850_001 | Banana | nucleus | 27.27 | 38.39 |
| CDX73868 | Canola | nucleus | 30.3 | 38.14 |
| Zm00001d027409_P001 | Maize | nucleus | 41.75 | 37.92 |
| CDY43751 | Canola | nucleus | 30.98 | 37.86 |
| Os10t0537100-00 | Rice | nucleus | 39.73 | 37.82 |
| HORVU1Hr1G051780.2 | Barley | nucleus | 37.04 | 37.54 |
| HORVU4Hr1G084950.3 | Barley | nucleus | 43.1 | 37.54 |
| GSMUA_Achr4P12210_001 | Banana | nucleus | 28.28 | 37.5 |
| TraesCS1D01G203900.1 | Wheat | nucleus | 36.7 | 37.46 |
| CDX84162 | Canola | nucleus | 30.64 | 37.45 |
| GSMUA_Achr7P04630_001 | Banana | nucleus | 25.93 | 37.38 |
| GSMUA_Achr1P03600_001 | Banana | nucleus | 41.41 | 37.27 |
| HORVU7Hr1G046950.1 | Barley | nucleus | 34.34 | 37.23 |
| CDX75073 | Canola | nucleus | 30.64 | 36.69 |
| GSMUA_Achr4P24970_001 | Banana | nucleus | 28.96 | 36.6 |
| CDY62470 | Canola | nucleus | 27.95 | 36.4 |
| CDY08512 | Canola | nucleus | 30.3 | 36.29 |
| KXG19111 | Sorghum | nucleus | 28.96 | 36.13 |
| KRG97268 | Soybean | nucleus | 48.82 | 35.11 |
| CDY01036 | Canola | nucleus | 30.3 | 35.02 |
| KRH68988 | Soybean | nucleus | 49.49 | 35.0 |
| GSMUA_Achr5P10220_001 | Banana | nucleus | 31.99 | 34.93 |
| Os04t0581400-01 | Rice | nucleus | 34.34 | 34.81 |
| VIT_15s0048g02370.t01 | Wine grape | nucleus | 53.2 | 34.27 |
| GSMUA_AchrUn_... | Banana | cytosol | 27.61 | 34.02 |
| TraesCS2B01G412700.1 | Wheat | nucleus | 46.8 | 33.99 |
| Os02t0683500-01 | Rice | nucleus | 47.14 | 33.98 |
| GSMUA_Achr9P18780_001 | Banana | nucleus | 32.66 | 33.92 |
| TraesCS2A01G394700.1 | Wheat | nucleus | 46.13 | 33.91 |
| TraesCS2D01G392400.1 | Wheat | nucleus | 46.46 | 33.74 |
| CDY47260 | Canola | nucleus | 30.3 | 33.71 |
| HORVU6Hr1G066190.2 | Barley | nucleus | 46.13 | 33.5 |
| GSMUA_Achr2P00400_001 | Banana | nucleus | 32.32 | 33.33 |
| Zm00001d051471_P001 | Maize | nucleus | 46.8 | 33.1 |
| TraesCS6A01G259600.1 | Wheat | nucleus | 46.13 | 33.09 |
| TraesCS6D01G240600.1 | Wheat | nucleus | 45.79 | 32.85 |
| TraesCS6B01G286900.1 | Wheat | nucleus | 45.12 | 32.76 |
| Zm00001d002562_P001 | Maize | nucleus | 45.12 | 32.76 |
| Zm00001d026005_P001 | Maize | nucleus | 44.44 | 32.67 |
| GSMUA_Achr2P10230_001 | Banana | nucleus | 33.33 | 32.57 |
| Zm00001d017618_P001 | Maize | nucleus | 46.13 | 32.46 |
| EES13386 | Sorghum | nucleus | 27.61 | 32.41 |
| Zm00001d024545_P001 | Maize | nucleus | 26.94 | 32.13 |
| EES07445 | Sorghum | nucleus | 46.8 | 32.03 |
| EES12712 | Sorghum | nucleus | 45.12 | 31.9 |
| VIT_02s0025g03000.t01 | Wine grape | nucleus | 46.46 | 30.26 |
| GSMUA_Achr5P20340_001 | Banana | nucleus | 34.01 | 29.97 |
| Os08t0157700-00 | Rice | nucleus | 28.62 | 29.62 |
| KRH47753 | Soybean | nucleus | 49.83 | 29.6 |
| CDX80996 | Canola | nucleus | 27.27 | 29.45 |
| CDX97251 | Canola | nucleus | 32.66 | 28.61 |
| CDY07140 | Canola | nucleus | 28.62 | 27.78 |
| CDX81561 | Canola | nucleus | 31.99 | 27.7 |
| CDX97996 | Canola | nucleus | 30.3 | 27.69 |
| CDY61361 | Canola | nucleus | 30.3 | 27.52 |
| CDY45849 | Canola | nucleus, plastid | 31.99 | 27.14 |
| CDY49614 | Canola | nucleus | 28.28 | 27.1 |
| CDY58354 | Canola | nucleus | 29.63 | 26.99 |
| CDY72302 | Canola | nucleus | 29.63 | 26.99 |
| CDY40973 | Canola | nucleus | 27.27 | 25.71 |
| KRH06334 | Soybean | nucleus | 49.49 | 25.26 |
| CDY24391 | Canola | nucleus | 28.28 | 24.85 |
| CDY36099 | Canola | nucleus | 28.96 | 24.57 |
| CDX99755 | Canola | nucleus | 27.61 | 24.12 |
| CDX84999 | Canola | nucleus | 28.62 | 24.01 |
| CDX98911 | Canola | nucleus | 19.19 | 23.85 |
| CDY70080 | Canola | nucleus | 19.19 | 23.85 |
| CDY16133 | Canola | nucleus | 28.62 | 23.74 |
| CDX83547 | Canola | nucleus | 21.21 | 19.44 |
| CDY37109 | Canola | nucleus | 20.2 | 18.02 |
| CDY46564 | Canola | nucleus | 19.87 | 17.4 |
| CDY51249 | Canola | nucleus | 19.87 | 17.4 |
| CDY29599 | Canola | nucleus | 18.86 | 17.23 |
| CDY22814 | Canola | nucleus | 19.19 | 16.91 |
| CDY65812 | Canola | nucleus | 15.82 | 16.73 |
| CDY29620 | Canola | nucleus | 19.19 | 16.57 |
| CDY35575 | Canola | nucleus | 19.19 | 16.52 |
| CDY37130 | Canola | nucleus | 18.52 | 16.22 |
| CDY22826 | Canola | nucleus | 18.18 | 15.98 |
| CDY25209 | Canola | nucleus | 18.52 | 15.49 |
| CDY22801 | Canola | nucleus | 17.85 | 15.23 |
| CDY37108 | Canola | nucleus, plastid | 16.84 | 14.58 |
Protein Annotations
| MapMan:15.5.5.3 | Gene3D:2.40.330.10 | GO:A0A078HW23 | UniProt:A0A078HW23 | InterPro:B3_DNA-bd | EnsemblPlants:CDY41564 |
| ProteinID:CDY41564 | ProteinID:CDY41564.1 | ncoils:Coil | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00073199001 | InterPro:IPR003340 | InterPro:IPR015300 | PFAM:PF02362 | PFscan:PS50863 |
| PANTHER:PTHR31140 | PANTHER:PTHR31140:SF38 | SMART:SM01019 | SUPFAM:SSF101936 | UniParc:UPI0004EB7073 | SEG:seg |
Description
BnaC04g00580DBnaC04g00580D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HW23]
Coordinates
chrLK032500:+:243082..244247
Molecular Weight (calculated)
33883.7 Da
IEP (calculated)
6.431
GRAVY (calculated)
-0.689
Length
297 amino acids
Sequence
(BLAST)
(BLAST)
001: MMMTNLSLTR EGEEEEEEEQ EEAKKPMEEV EREHMFDKVV TPSDVGKLNR LVIPKQYAER YFPLDSSTNE KGLLLNFEDL TGKSWRFRYS YWNSSQSYVM
101: TKGWSRFVKD KKLDAGDIVS FQRCVGDSGR DSRLFIDWRR RLKVPDHPTS IAHFAAGSMF PRFYSFPTAT SYNLYNYQQP RHHHHSGYNY PQIPREFGYG
201: YLVDQRAVVA DPLVIESVPV MMHGGAQVSQ AVVGTAGKRL RLFGVDMEEE SSSSGGSLPR GDASPSSSLF QLRLGSSSED DHFSKKGKSS LPFDLDQ
101: TKGWSRFVKD KKLDAGDIVS FQRCVGDSGR DSRLFIDWRR RLKVPDHPTS IAHFAAGSMF PRFYSFPTAT SYNLYNYQQP RHHHHSGYNY PQIPREFGYG
201: YLVDQRAVVA DPLVIESVPV MMHGGAQVSQ AVVGTAGKRL RLFGVDMEEE SSSSGGSLPR GDASPSSSLF QLRLGSSSED DHFSKKGKSS LPFDLDQ
001: MDLSLAPTTT TSSDQEQDRD QELTSNIGAS SSSGPSGNNN NLPMMMIPPP EKEHMFDKVV TPSDVGKLNR LVIPKQHAER YFPLDSSNNQ NGTLLNFQDR
101: NGKMWRFRYS YWNSSQSYVM TKGWSRFVKE KKLDAGDIVS FQRGIGDESE RSKLYIDWRH RPDMSLVQAH QFGNFGFNFN FPTTSQYSNR FHPLPEYNSV
201: PIHRGLNIGN HQRSYYNTQR QEFVGYGYGN LAGRCYYTGS PLDHRNIVGS EPLVIDSVPV VPGRLTPVML PPLPPPPSTA GKRLRLFGVN MECGNDYNQQ
301: EESWLVPRGE IGASSSSSSA LRLNLSTDHD DDNDDGDDGD DDQFAKKGKS SLSLNFNP
101: NGKMWRFRYS YWNSSQSYVM TKGWSRFVKE KKLDAGDIVS FQRGIGDESE RSKLYIDWRH RPDMSLVQAH QFGNFGFNFN FPTTSQYSNR FHPLPEYNSV
201: PIHRGLNIGN HQRSYYNTQR QEFVGYGYGN LAGRCYYTGS PLDHRNIVGS EPLVIDSVPV VPGRLTPVML PPLPPPPSTA GKRLRLFGVN MECGNDYNQQ
301: EESWLVPRGE IGASSSSSSA LRLNLSTDHD DDNDDGDDGD DDQFAKKGKS SLSLNFNP
Arabidopsis Description
NGA3NGA3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3T3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.