Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030476.1-P | Field mustard | nucleus | 99.69 | 99.69 |
| CDY65812 | Canola | nucleus | 82.77 | 95.73 |
| CDY29620 | Canola | nucleus | 64.92 | 61.34 |
| CDY37109 | Canola | nucleus | 62.46 | 60.96 |
| CDY35575 | Canola | nucleus | 64.62 | 60.87 |
| CDY22814 | Canola | nucleus | 62.15 | 59.94 |
| CDY51249 | Canola | nucleus | 62.46 | 59.88 |
| CDY46564 | Canola | nucleus | 62.46 | 59.88 |
| CDY37130 | Canola | nucleus | 62.15 | 59.59 |
| CDY22826 | Canola | nucleus | 58.77 | 56.51 |
| CDY37108 | Canola | nucleus, plastid | 57.54 | 54.52 |
| CDY25209 | Canola | nucleus | 58.46 | 53.52 |
| CDY22801 | Canola | nucleus | 56.31 | 52.59 |
| KRG93082 | Soybean | nucleus | 44.31 | 45.14 |
| VIT_11s0037g00010.t01 | Wine grape | nucleus | 43.38 | 39.5 |
| Solyc03g083110.1.1 | Tomato | nucleus | 40.62 | 39.4 |
| PGSC0003DMT400085602 | Potato | nucleus | 14.77 | 37.5 |
| PGSC0003DMT400092316 | Potato | nucleus | 13.23 | 32.33 |
| CDY67348 | Canola | nucleus | 14.46 | 31.33 |
| CDY72302 | Canola | nucleus | 31.08 | 30.98 |
| CDX97996 | Canola | nucleus | 30.77 | 30.77 |
| CDY58354 | Canola | nucleus | 30.77 | 30.67 |
| GSMUA_Achr11P... | Banana | nucleus | 31.69 | 30.65 |
| CDY61361 | Canola | nucleus | 30.77 | 30.58 |
| CDY40973 | Canola | nucleus | 28.92 | 29.84 |
| CDX81561 | Canola | nucleus | 31.08 | 29.45 |
| CDY24391 | Canola | nucleus | 30.46 | 29.29 |
| CDY45849 | Canola | nucleus, plastid | 31.38 | 29.14 |
| Solyc12g098460.1.1 | Tomato | nucleus | 18.46 | 28.71 |
| CDY36099 | Canola | nucleus | 30.46 | 28.29 |
| CDY16133 | Canola | nucleus | 30.46 | 27.65 |
| CDX99755 | Canola | nucleus | 28.92 | 27.65 |
| CDX84999 | Canola | nucleus | 29.85 | 27.4 |
| GSMUA_Achr8P14650_001 | Banana | nucleus | 34.77 | 27.29 |
| CDX84162 | Canola | nucleus | 19.69 | 26.34 |
| CDY43751 | Canola | nucleus | 19.38 | 25.93 |
| CDX75073 | Canola | nucleus | 19.69 | 25.81 |
| CDY43060 | Canola | cytosol | 12.62 | 25.15 |
| CDX83547 | Canola | nucleus | 24.92 | 25.0 |
| CDX73868 | Canola | nucleus | 17.85 | 24.58 |
| CDY62470 | Canola | nucleus | 16.92 | 24.12 |
| CDY08512 | Canola | nucleus | 18.15 | 23.79 |
| CDY01036 | Canola | nucleus | 18.15 | 22.96 |
| Zm00001d024354_P001 | Maize | nucleus, plastid | 19.69 | 22.46 |
| CDY47260 | Canola | nucleus | 18.15 | 22.1 |
| CDX80996 | Canola | nucleus | 18.15 | 21.45 |
| CDY69432 | Canola | nucleus | 17.85 | 20.86 |
| EES14747 | Sorghum | plastid | 17.54 | 20.43 |
| CDX67872 | Canola | nucleus | 17.85 | 20.35 |
| CDX76605 | Canola | nucleus | 17.85 | 19.86 |
| CDY11388 | Canola | nucleus | 17.85 | 19.86 |
| Os02t0455800-01 | Rice | nucleus | 15.69 | 19.1 |
| PGSC0003DMT400040900 | Potato | nucleus | 8.92 | 18.95 |
| CDY41564 | Canola | nucleus | 17.23 | 18.86 |
| CDY15208 | Canola | nucleus | 18.46 | 18.63 |
| CDY07140 | Canola | nucleus | 17.54 | 18.63 |
| KXG24821 | Sorghum | nucleus | 16.31 | 18.6 |
| CDX80053 | Canola | nucleus | 16.92 | 18.52 |
| CDY48008 | Canola | nucleus | 17.23 | 18.42 |
| CDY58763 | Canola | nucleus | 17.85 | 18.24 |
| CDX83351 | Canola | nucleus | 17.23 | 18.18 |
| CDY58764 | Canola | nucleus | 17.85 | 18.12 |
| CDY50908 | Canola | nucleus | 17.54 | 18.1 |
| CDY27515 | Canola | nucleus | 16.92 | 18.09 |
| CDY49614 | Canola | nucleus | 17.23 | 18.06 |
| CDX90001 | Canola | nucleus | 19.08 | 18.02 |
| CDX97251 | Canola | nucleus | 18.15 | 17.4 |
| Os02t0455900-00 | Rice | nucleus | 14.15 | 16.91 |
| CDY70080 | Canola | nucleus | 11.38 | 15.48 |
| CDX98911 | Canola | nucleus | 11.38 | 15.48 |
Protein Annotations
| MapMan:15.5.5.3 | MapMan:15.5.7.5 | Gene3D:2.40.330.10 | Gene3D:3.30.730.10 | GO:A0A078GWT6 | UniProt:A0A078GWT6 |
| InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:B3_DNA-bd | EnsemblPlants:CDY29599 | ProteinID:CDY29599 | ProteinID:CDY29599.1 |
| InterPro:DNA-bd_dom_sf | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:GSBRNA2T00043338001 | InterPro:IPR001471 | InterPro:IPR003340 | InterPro:IPR015300 | InterPro:IPR036955 | PFAM:PF00847 |
| PFAM:PF02362 | PFscan:PS50863 | PFscan:PS51032 | PANTHER:PTHR31140 | PANTHER:PTHR31140:SF13 | SMART:SM00380 |
| SMART:SM01019 | SUPFAM:SSF101936 | SUPFAM:SSF54171 | UniParc:UPI0004EDC4D9 | SEG:seg | : |
Description
BnaA05g15710DBnaA05g15710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GWT6]
Coordinates
chrLK032240:-:166128..167105
Molecular Weight (calculated)
37505.8 Da
IEP (calculated)
9.748
GRAVY (calculated)
-0.546
Length
325 amino acids
Sequence
(BLAST)
(BLAST)
001: MGICNQMTET STSSNPLLPL KKRKRPVDDT TDNVLAVATK KVALLGNSKY KGVVEHHRNG HWGAQIYIDH KRIWLGTFKS SVEAAMAYDS ASIKLRSFDA
101: TCHRNFPLNT STVHEPNFQK GYTTEAVLEM IKDGSYQQKF KDYRSLPFHN VASINLVGSE RVQGDQDSTK YRLTCTELFR KGLTPSDVGK LNRLVIPKRH
201: AVKYLPFINE REEGEIVEDV EVVFFDKTMR QWKFRYCYWT SSQSFVFTSG WKRFVKEKNL KERDVIVFYR CDLVGQSKNF LMIHVQYSSE GEVKTENFVN
301: SKLKEEETKS VDNKGGFMLF GVKIQ
101: TCHRNFPLNT STVHEPNFQK GYTTEAVLEM IKDGSYQQKF KDYRSLPFHN VASINLVGSE RVQGDQDSTK YRLTCTELFR KGLTPSDVGK LNRLVIPKRH
201: AVKYLPFINE REEGEIVEDV EVVFFDKTMR QWKFRYCYWT SSQSFVFTSG WKRFVKEKNL KERDVIVFYR CDLVGQSKNF LMIHVQYSSE GEVKTENFVN
301: SKLKEEETKS VDNKGGFMLF GVKIQ
001: MESSSVDEST TSTGSICETP AITPAKKSSV GNLYRMGSGS SVVLDSENGV EAESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEDEAARAYD
101: VAVHRFRRRD AVTNFKDVKM DEDEVDFLNS HSKSEIVDML RKHTYNEELE QSKRRRNGNG NMTRTLLTSG LSNDGVSTTG FRSAEALFEK AVTPSDVGKL
201: NRLVIPKHHA EKHFPLPSSN VSVKGVLLNF EDVNGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKNLRAGD VVSFSRSNGQ DQQLYIGWKS RSGSDLDAGR
301: VLRLFGVNIS PESSRNDVVG NKRVNDTEML SLVCSKKQRI FHAS
101: VAVHRFRRRD AVTNFKDVKM DEDEVDFLNS HSKSEIVDML RKHTYNEELE QSKRRRNGNG NMTRTLLTSG LSNDGVSTTG FRSAEALFEK AVTPSDVGKL
201: NRLVIPKHHA EKHFPLPSSN VSVKGVLLNF EDVNGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKNLRAGD VVSFSRSNGQ DQQLYIGWKS RSGSDLDAGR
301: VLRLFGVNIS PESSRNDVVG NKRVNDTEML SLVCSKKQRI FHAS
Arabidopsis Description
RAV1AP2/ERF and B3 domain-containing transcription factor RAV1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZWM9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.