Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY22814 | Canola | nucleus | 77.18 | 76.26 |
| CDY29620 | Canola | nucleus | 68.47 | 66.28 |
| CDY35575 | Canola | nucleus | 67.87 | 65.51 |
| CDY37130 | Canola | nucleus | 66.07 | 64.9 |
| AT1G50680.1 | Thale cress | nucleus | 65.17 | 64.39 |
| CDY46564 | Canola | nucleus | 64.86 | 63.72 |
| CDY51249 | Canola | nucleus | 64.56 | 63.42 |
| AT1G51120.1 | Thale cress | nucleus | 66.67 | 63.07 |
| CDY29599 | Canola | nucleus | 60.96 | 62.46 |
| CDY22826 | Canola | nucleus | 61.56 | 60.65 |
| CDY65812 | Canola | nucleus | 51.05 | 60.5 |
| CDY37108 | Canola | nucleus, plastid | 61.86 | 60.06 |
| CDY25209 | Canola | nucleus | 62.76 | 58.87 |
| CDY22801 | Canola | nucleus | 60.66 | 58.05 |
| KRG93082 | Soybean | nucleus | 45.35 | 47.34 |
| PGSC0003DMT400085602 | Potato | nucleus | 17.12 | 44.53 |
| Solyc03g083110.1.1 | Tomato | nucleus | 41.44 | 41.19 |
| VIT_11s0037g00010.t01 | Wine grape | nucleus | 43.24 | 40.34 |
| CDY67348 | Canola | nucleus | 14.41 | 32.0 |
| CDY40973 | Canola | nucleus | 29.43 | 31.11 |
| PGSC0003DMT400092316 | Potato | nucleus | 12.31 | 30.83 |
| CDY72302 | Canola | nucleus | 30.03 | 30.67 |
| GSMUA_Achr11P... | Banana | nucleus | 30.93 | 30.65 |
| CDY24391 | Canola | nucleus | 30.63 | 30.18 |
| CDX97996 | Canola | nucleus | 29.43 | 30.15 |
| CDY58354 | Canola | nucleus | 29.43 | 30.06 |
| CDY61361 | Canola | nucleus | 29.43 | 29.97 |
| CDX81561 | Canola | nucleus | 30.63 | 29.74 |
| CDY45849 | Canola | nucleus, plastid | 30.93 | 29.43 |
| CDY16133 | Canola | nucleus | 31.53 | 29.33 |
| CDY36099 | Canola | nucleus | 30.63 | 29.14 |
| CDX84999 | Canola | nucleus | 30.93 | 29.1 |
| GSMUA_Achr8P14650_001 | Banana | nucleus | 36.04 | 28.99 |
| CDX99755 | Canola | nucleus | 29.13 | 28.53 |
| Solyc12g098460.1.1 | Tomato | nucleus | 17.72 | 28.23 |
| CDX83547 | Canola | nucleus | 24.92 | 25.62 |
| CDX84162 | Canola | nucleus | 18.32 | 25.1 |
| CDY43751 | Canola | nucleus | 18.02 | 24.69 |
| CDX75073 | Canola | nucleus | 18.32 | 24.6 |
| CDY43060 | Canola | cytosol | 12.01 | 24.54 |
| CDY08512 | Canola | nucleus | 18.02 | 24.19 |
| CDX73868 | Canola | nucleus | 17.12 | 24.15 |
| CDY62470 | Canola | nucleus | 15.92 | 23.25 |
| CDY01036 | Canola | nucleus | 17.72 | 22.96 |
| CDY69432 | Canola | nucleus | 18.02 | 21.58 |
| Zm00001d024354_P001 | Maize | nucleus, plastid | 18.02 | 21.05 |
| CDY47260 | Canola | nucleus | 16.82 | 20.97 |
| CDX67872 | Canola | nucleus | 17.72 | 20.7 |
| CDY11388 | Canola | nucleus | 18.02 | 20.55 |
| CDX76605 | Canola | nucleus | 18.02 | 20.55 |
| CDX80053 | Canola | nucleus | 18.32 | 20.54 |
| CDY41564 | Canola | nucleus | 18.02 | 20.2 |
| CDX83351 | Canola | nucleus | 18.32 | 19.81 |
| CDY15208 | Canola | nucleus | 18.92 | 19.57 |
| CDY27515 | Canola | nucleus | 17.72 | 19.41 |
| EES14747 | Sorghum | plastid | 16.22 | 19.35 |
| CDX80996 | Canola | nucleus | 15.92 | 19.27 |
| CDY48008 | Canola | nucleus | 17.42 | 19.08 |
| CDY50908 | Canola | nucleus | 18.02 | 19.05 |
| CDY07140 | Canola | nucleus | 17.42 | 18.95 |
| CDX90001 | Canola | nucleus | 19.52 | 18.9 |
| CDY49614 | Canola | nucleus | 17.12 | 18.39 |
| Os02t0455800-01 | Rice | nucleus | 14.71 | 18.35 |
| CDY58763 | Canola | nucleus | 17.42 | 18.24 |
| CDY58764 | Canola | nucleus | 17.42 | 18.12 |
| CDX97251 | Canola | nucleus | 18.02 | 17.7 |
| PGSC0003DMT400040900 | Potato | nucleus | 8.11 | 17.65 |
| KXG24821 | Sorghum | nucleus | 14.71 | 17.19 |
| Os02t0455900-00 | Rice | nucleus | 13.51 | 16.54 |
| CDY70080 | Canola | nucleus | 11.11 | 15.48 |
| CDX98911 | Canola | nucleus | 11.11 | 15.48 |
Protein Annotations
| MapMan:15.5.5.3 | MapMan:15.5.7.5 | Gene3D:2.40.330.10 | Gene3D:3.30.730.10 | GO:A0A078HID1 | UniProt:A0A078HID1 |
| InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:B3_DNA-bd | EnsemblPlants:CDY37109 | ProteinID:CDY37109 | ProteinID:CDY37109.1 |
| InterPro:DNA-bd_dom_sf | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:GSBRNA2T00063330001 | InterPro:IPR001471 | InterPro:IPR003340 | InterPro:IPR015300 | InterPro:IPR036955 | PFAM:PF00847 |
| PFAM:PF02362 | PRINTS:PR00367 | PFscan:PS50863 | PFscan:PS51032 | PANTHER:PTHR31140 | PANTHER:PTHR31140:SF13 |
| SMART:SM00380 | SMART:SM01019 | SUPFAM:SSF101936 | SUPFAM:SSF54171 | UniParc:UPI0004EF0C49 | SEG:seg |
Description
BnaC06g03900DBnaC06g03900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HID1]
Coordinates
chrLK032392:+:19549..20550
Molecular Weight (calculated)
38065.0 Da
IEP (calculated)
8.249
GRAVY (calculated)
-0.624
Length
333 amino acids
Sequence
(BLAST)
(BLAST)
001: MNTEDAKTET PTVSSGCFLP LKKRVKLLNN PPNSALEVVV SGDAKYKGVV QQPTGHWGAQ IYADHKRIWL GTFRSAAEAA AAYDSASIKI RSYDANMHRN
101: FPWSEYTVHE PAFQNEHTTE DVLSMIKDGT YQRKYREFFK KVQSKIVGGY NMVGSKEDQE SKKCFSCTEL FRKELTPSDV GKLNRLVIPK KYAVRYLPLL
201: RDDRKERGEG EIGEDVEVVF YDRAMRQWKF RYCYWKSSQS FVFTRGWNGF VKEKSLKEKD VIVFYTCDVP TLEGQSKKFL MIDVQCSSDE GSAVCDEEVN
301: ETVHNSSEGG VKTEETKSVE NKGGFMLFGV RIQ
101: FPWSEYTVHE PAFQNEHTTE DVLSMIKDGT YQRKYREFFK KVQSKIVGGY NMVGSKEDQE SKKCFSCTEL FRKELTPSDV GKLNRLVIPK KYAVRYLPLL
201: RDDRKERGEG EIGEDVEVVF YDRAMRQWKF RYCYWKSSQS FVFTRGWNGF VKEKSLKEKD VIVFYTCDVP TLEGQSKKFL MIDVQCSSDE GSAVCDEEVN
301: ETVHNSSEGG VKTEETKSVE NKGGFMLFGV RIQ
001: MESSSVDEST TSTGSICETP AITPAKKSSV GNLYRMGSGS SVVLDSENGV EAESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEDEAARAYD
101: VAVHRFRRRD AVTNFKDVKM DEDEVDFLNS HSKSEIVDML RKHTYNEELE QSKRRRNGNG NMTRTLLTSG LSNDGVSTTG FRSAEALFEK AVTPSDVGKL
201: NRLVIPKHHA EKHFPLPSSN VSVKGVLLNF EDVNGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKNLRAGD VVSFSRSNGQ DQQLYIGWKS RSGSDLDAGR
301: VLRLFGVNIS PESSRNDVVG NKRVNDTEML SLVCSKKQRI FHAS
101: VAVHRFRRRD AVTNFKDVKM DEDEVDFLNS HSKSEIVDML RKHTYNEELE QSKRRRNGNG NMTRTLLTSG LSNDGVSTTG FRSAEALFEK AVTPSDVGKL
201: NRLVIPKHHA EKHFPLPSSN VSVKGVLLNF EDVNGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKNLRAGD VVSFSRSNGQ DQQLYIGWKS RSGSDLDAGR
301: VLRLFGVNIS PESSRNDVVG NKRVNDTEML SLVCSKKQRI FHAS
Arabidopsis Description
RAV1AP2/ERF and B3 domain-containing transcription factor RAV1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZWM9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.