Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400092316 | Potato | nucleus | 40.52 | 46.62 |
| Solyc12g098460.1.1 | Tomato | nucleus | 50.33 | 36.84 |
| PGSC0003DMT400085602 | Potato | nucleus | 20.26 | 24.22 |
| VIT_11s0037g00010.t01 | Wine grape | nucleus | 23.53 | 10.08 |
| GSMUA_Achr11P... | Banana | nucleus | 21.57 | 9.82 |
| Bra018868.1-P | Field mustard | nucleus | 20.26 | 9.17 |
| KRG93082 | Soybean | nucleus | 18.95 | 9.09 |
| CDY29620 | Canola | nucleus | 20.26 | 9.01 |
| CDY35575 | Canola | nucleus | 20.26 | 8.99 |
| GSMUA_Achr8P14650_001 | Banana | nucleus | 24.18 | 8.94 |
| Bra030476.1-P | Field mustard | nucleus | 18.95 | 8.92 |
| CDY29599 | Canola | nucleus | 18.95 | 8.92 |
| CDY22814 | Canola | nucleus | 19.61 | 8.9 |
| Bra030458.1-P | Field mustard | nucleus | 18.3 | 8.86 |
| CDY46564 | Canola | nucleus | 19.61 | 8.85 |
| Bra014282.1-P | Field mustard | nucleus | 19.61 | 8.85 |
| AT1G51120.1 | Thale cress | nucleus | 20.26 | 8.81 |
| CDY51249 | Canola | nucleus | 18.95 | 8.55 |
| Bra018894.1-P | Field mustard | nucleus | 18.3 | 8.28 |
| CDY22826 | Canola | nucleus | 18.3 | 8.28 |
| CDY37130 | Canola | nucleus | 18.3 | 8.26 |
| Bra018854.1-P | Field mustard | nucleus | 18.3 | 8.24 |
| CDY37109 | Canola | nucleus | 17.65 | 8.11 |
| AT1G50680.1 | Thale cress | nucleus | 17.65 | 8.01 |
| CDY25209 | Canola | nucleus | 18.3 | 7.89 |
| CDY37108 | Canola | nucleus, plastid | 17.65 | 7.87 |
| Os02t0455800-01 | Rice | nucleus | 13.73 | 7.87 |
| PGSC0003DMT400002125 | Potato | nucleus | 20.26 | 7.79 |
| Bra018869.1-P | Field mustard | nucleus | 16.99 | 7.78 |
| PGSC0003DMT400019296 | Potato | nucleus | 16.99 | 7.01 |
| KXG24821 | Sorghum | nucleus | 12.42 | 6.67 |
| CDY22801 | Canola | nucleus | 15.03 | 6.61 |
| EES14747 | Sorghum | plastid | 11.76 | 6.45 |
| PGSC0003DMT400072354 | Potato | nucleus | 11.76 | 6.25 |
| PGSC0003DMT400023077 | Potato | nucleus | 13.07 | 5.97 |
| Zm00001d024354_P001 | Maize | nucleus, plastid | 11.11 | 5.96 |
| Os02t0455900-00 | Rice | nucleus | 10.46 | 5.88 |
| PGSC0003DMT400015011 | Potato | nucleus | 11.76 | 5.75 |
| CDY65812 | Canola | nucleus | 10.46 | 5.69 |
| PGSC0003DMT400015010 | Potato | nucleus | 11.11 | 5.67 |
| PGSC0003DMT400031863 | Potato | nucleus | 12.42 | 4.68 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400040900 | EnsemblPlantsGene:PGSC0003DMG400015820 | Gene3D:2.40.330.10 | InterPro:DNA-bd_pseudobarrel_sf | InterPro:IPR015300 | PANTHER:PTHR31140 |
| PANTHER:PTHR31140:SF17 | PGSC:PGSC0003DMG400015820 | SUPFAM:SSF101936 | UniParc:UPI00029548BA | UniProt:M1BAM0 | MapMan:35.2 |
Description
Gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400015820]
Coordinates
chr12:+:39992756..39997745
Molecular Weight (calculated)
17134.6 Da
IEP (calculated)
10.484
GRAVY (calculated)
-0.578
Length
153 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGESNNISD SRLMKGVMDE HNGQCTKGWH KFVKAKSLRA TNTIVFNLCE SKNGTNENRN TFVIDVMKNV EDLPMDLELN HDAIDVDAAL TPGLLFRKQI
101: ELRNKPRVTL DSFSPFRRLK MVNTRFNGVR SVAPVNALAE KSAARGSSRG KGR
101: ELRNKPRVTL DSFSPFRRLK MVNTRFNGVR SVAPVNALAE KSAARGSSRG KGR
001: MRLDDEPENA LVVSSSPKTV VASGNVKYKG VVQQQNGHWG AQIYADHKRI WLGTFKSADE AATAYDSASI KLRSFDANSH RNFPWSTITL NEPDFQNCYT
101: TETVLNMIRD GSYQHKFRDF LRIRSQIVAS INIGGPKQAR GEVNQESDKC FSCTQLFQKE LTPSDVGKLN RLVIPKKYAV KYMPFISADQ SEKEEGEIVG
201: SVEDVEVVFY DRAMRQWKFR YCYWKSSQSF VFTRGWNSFV KEKNLKEKDV IAFYTCDVPN NVKTLEGQRK NFLMIDVHCF SDNGSVVAEE VSMTVHDSSV
301: QVKKTENLVS SMLEDKETKS EENKGGFMLF GVRIECP
101: TETVLNMIRD GSYQHKFRDF LRIRSQIVAS INIGGPKQAR GEVNQESDKC FSCTQLFQKE LTPSDVGKLN RLVIPKKYAV KYMPFISADQ SEKEEGEIVG
201: SVEDVEVVFY DRAMRQWKFR YCYWKSSQSF VFTRGWNSFV KEKNLKEKDV IAFYTCDVPN NVKTLEGQRK NFLMIDVHCF SDNGSVVAEE VSMTVHDSSV
301: QVKKTENLVS SMLEDKETKS EENKGGFMLF GVRIECP
Arabidopsis Description
AP2/ERF and B3 domain-containing transcription factor At1g50680 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6P5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.