Factsheet for PGSC0003DMT400031863

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g083400.2.1	Tomato	nucleus	76.11	92.52
Zm00001d035982_P001	Maize	nucleus	13.79	63.64
PGSC0003DMT400015011	Potato	nucleus	46.06	59.74
PGSC0003DMT400015010	Potato	nucleus	43.84	59.33
GSMUA_Achr4P30170_001	Banana	nucleus	30.54	49.8
GSMUA_Achr4P26430_001	Banana	nucleus	30.3	49.2
Zm00001d048815_P001	Maize	nucleus	26.6	46.55
Zm00001d029749_P001	Maize	nucleus	30.79	45.79
EER92015	Sorghum	nucleus	30.54	45.26
Os03t0120900-01	Rice	nucleus	34.48	45.02
Zm00001d047359_P001	Maize	nucleus	30.3	44.4
Zm00001d010077_P001	Maize	nucleus	28.33	44.4
GSMUA_Achr5P12850_001	Banana	nucleus	22.66	43.6
TraesCS5A01G516600.1	Wheat	nucleus	33.99	43.53
GSMUA_Achr1P03600_001	Banana	nucleus	34.98	43.03
OQU93364	Sorghum	nucleus	34.98	43.03
TraesCS4B01G348500.1	Wheat	nucleus	33.74	42.95
TraesCS1B01G215000.1	Wheat	nucleus	29.06	42.91
Zm00001d027409_P001	Maize	nucleus	34.48	42.81
TraesCS1A01G200500.1	Wheat	nucleus	29.31	42.81
TraesCS7A01G020800.1	Wheat	nucleus	20.69	42.42
Os06t0107800-02	Rice	nucleus	20.69	42.21
TraesCS7A01G461000.1	Wheat	nucleus	20.2	42.05
TraesCS7D01G448900.1	Wheat	nucleus	19.95	41.33
HORVU1Hr1G051780.2	Barley	nucleus	29.8	41.3
TraesCS1D01G203900.1	Wheat	nucleus	29.56	41.24
HORVU0Hr1G022200.1	Barley	nucleus	20.2	41.0
TraesCS7B01G362500.1	Wheat	nucleus	19.7	40.82
GSMUA_Achr7P04630_001	Banana	nucleus	20.69	40.78
Zm00001d035903_P001	Maize	nucleus	22.41	40.62
HORVU7Hr1G046950.1	Barley	nucleus	27.34	40.51
KXG19112	Sorghum	nucleus	20.44	40.49
Zm00001d024103_P001	Maize	nucleus	22.17	40.18
Os10t0537100-00	Rice	nucleus	30.79	40.06
TraesCS4A01G472700.1	Wheat	nucleus	21.18	39.63
Os04t0581400-01	Rice	nucleus	28.57	39.59
HORVU7Hr1G002230.1	Barley	nucleus	21.43	39.55
TraesCS7D01G017000.1	Wheat	nucleus	20.94	39.17
TraesCS7A01G020700.1	Wheat	nucleus	20.69	39.07
VIT_02s0025g03000.t01	Wine grape	nucleus	43.6	38.82
HORVU4Hr1G084950.3	Barley	nucleus	32.51	38.71
GSMUA_Achr2P00400_001	Banana	nucleus	27.34	38.54
GSMUA_Achr5P10220_001	Banana	nucleus	25.62	38.24
GSMUA_Achr4P24970_001	Banana	nucleus	21.92	37.87
GSMUA_Achr2P10230_001	Banana	nucleus	28.08	37.5
Os02t0683500-01	Rice	nucleus	37.93	37.38
HORVU6Hr1G066190.2	Barley	nucleus	37.44	37.16
GSMUA_AchrUn_...	Banana	cytosol	21.92	36.93
TraesCS6B01G286900.1	Wheat	nucleus	37.19	36.92
TraesCS2A01G394700.1	Wheat	nucleus	36.7	36.88
TraesCS6D01G240600.1	Wheat	nucleus	37.44	36.72
TraesCS6A01G259600.1	Wheat	nucleus	37.44	36.72
TraesCS2B01G412700.1	Wheat	nucleus	36.95	36.67
TraesCS2D01G392400.1	Wheat	nucleus	36.7	36.43
GSMUA_Achr9P18780_001	Banana	nucleus	25.37	36.01
Zm00001d002562_P001	Maize	nucleus	36.21	35.94
KXG19111	Sorghum	nucleus	20.94	35.71
EES12712	Sorghum	nucleus	36.95	35.71
Zm00001d026005_P001	Maize	nucleus	35.47	35.64
GSMUA_Achr4P12210_001	Banana	nucleus	19.46	35.27
KRG97268	Soybean	nucleus	35.47	34.87
KRH68988	Soybean	nucleus	35.71	34.52
PGSC0003DMT400072354	Potato	nucleus	24.38	34.38
Zm00001d017618_P001	Maize	nucleus	35.71	34.36
Zm00001d051471_P001	Maize	nucleus	35.47	34.29
EES13386	Sorghum	nucleus	21.18	33.99
VIT_15s0048g02370.t01	Wine grape	nucleus	38.42	33.84
Zm00001d024545_P001	Maize	nucleus	20.69	33.73
EES07445	Sorghum	nucleus	35.96	33.64
GSMUA_Achr5P20340_001	Banana	nucleus	26.6	32.05
PGSC0003DMT400023077	Potato	nucleus	25.86	31.34
Os08t0157700-00	Rice	nucleus	21.92	31.01
KRH47753	Soybean	nucleus	37.44	30.4
PGSC0003DMT400085602	Potato	nucleus	9.36	29.69
KRH06334	Soybean	nucleus	37.19	25.95
PGSC0003DMT400019296	Potato	nucleus	23.65	25.88
PGSC0003DMT400092316	Potato	nucleus	8.37	25.56
PGSC0003DMT400002125	Potato	nucleus	24.14	24.62
PGSC0003DMT400040900	Potato	nucleus	4.68	12.42

Protein Annotations

MapMan:15.5.5.3	Gene3D:2.40.330.10	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300	UniProt:M1AWD5	PFAM:PF02362	EnsemblPlantsGene:PGSC0003DMG400012222
PGSC:PGSC0003DMG400012222	EnsemblPlants:PGSC0003DMT400031863	PFscan:PS50863	PANTHER:PTHR31140	PANTHER:PTHR31140:SF4	SMART:SM01019
SUPFAM:SSF101936	UniParc:UPI000296120E	SEG:seg	:	:	:

Description

B3 domain-containing transcription factor NGA1 [Source:PGSC_GENE;Acc:PGSC0003DMG400012222]

Coordinates

chr8:+:56844094..56849780

Molecular Weight (calculated)

45643.7 Da

IEP (calculated)

6.761

GRAVY (calculated)

-0.731

Length

406 amino acids

Sequence
(BLAST)

001: MNFFDQGGTR QFSHSSSSSQ KIIVPDFSYQ QRSTTNNGED STDLVMNMDL DPADEVGESN TIEREHMFDK VVTPSDVGKL NRLVIPKQHA EKYFPLDSST
101: NEKGLLLNFE DRNGKPWRFR YSYWNSSQSY VMTKGWSRFV KEKKLDAGDI VSFQRGVGEL GKDRLFIDWR RRPDAPDHLH YTHFTNHHLH NNLYRSNIQY
201: PAAAAWNRPL FLQPPPPPDH SHLQYSLEPA AGSMSHHHQQ QSHGSSPNYY YDTCNFNNSR TTVVNGNPCP SGSVVYLRSG SAQVPQQAGL MQLRGHSNST
301: SGRVVEPVVF DSVPVVQGKA AAKRFRLFGV NMDCPISDSD ESCEITSSSS SLPNPATTAT YSHVPQFSSL SFRTFNNYDT NPPAATEEES FDKGKASMSL
401: NLDLDI

Best Arabidopsis Sequence Match ( AT2G46870.1 )
(BLAST)

001: MMTDLSLTRD EDEEEAKPLA EEEGAREVAD REHMFDKVVT PSDVGKLNRL VIPKQHAERF FPLDSSSNEK GLLLNFEDLT GKSWRFRYSY WNSSQSYVMT
101: KGWSRFVKDK KLDAGDIVSF QRCVGDSGRD SRLFIDWRRR PKVPDHPHFA AGAMFPRFYS FPSTNYSLYN HQQQRHHHSG GGYNYHQIPR EFGYGYFVRS
201: VDQRNNPAAA VADPLVIESV PVMMHGRANQ ELVGTAGKRL RLFGVDMECG ESGMTNSTEE ESSSSGGSLP RGGGGGASSS SFFQLRLGSS SEDDHFTKKG
301: KSSLSFDLDQ

Arabidopsis Description

NGA1B3 domain-containing transcription factor NGA1 [Source:UniProtKB/Swiss-Prot;Acc:O82799]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.