Factsheet for PGSC0003DMT400002125

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g009790.1.1	Tomato	nucleus	95.73	96.46
VIT_01s0011g03070.t01	Wine grape	nucleus	67.59	71.16
CDX97996	Canola	nucleus	55.28	67.69
CDY61361	Canola	nucleus	55.28	67.28
CDY72302	Canola	nucleus	54.52	66.56
CDY58354	Canola	nucleus	54.02	65.95
KRH75484	Soybean	nucleus	62.81	65.1
AT1G13260.1	Thale cress	nucleus	55.78	64.53
Bra019821.1-P	Field mustard	nucleus	55.28	64.52
Bra026917.1-P	Field mustard	nucleus	55.03	64.41
CDY24391	Canola	nucleus	54.52	64.2
KRH34761	Soybean	nucleus	56.53	64.1
CDY40973	Canola	nucleus	50.25	63.49
CDX84999	Canola	nucleus	56.28	63.28
KRG92025	Soybean	nucleus	57.54	63.26
AT3G25730.1	Thale cress	nucleus	52.76	63.06
KRH70603	Soybean	nucleus	63.32	62.84
PGSC0003DMT400019296	Potato	nucleus	58.29	62.53
AT1G68840.1	Thale cress	nucleus	55.28	62.5
AT1G25560.1	Thale cress	nucleus	56.53	62.33
GSMUA_Achr5P09950_001	Banana	nucleus	50.25	62.11
CDY16133	Canola	nucleus	55.78	62.01
CDX99755	Canola	nucleus	52.76	61.76
CDY36099	Canola	nucleus	54.02	61.43
Bra026509.1-P	Field mustard	nucleus	50.0	61.04
Bra011002.1-P	Field mustard	nucleus	54.77	60.72
CDX83547	Canola	nucleus	49.25	60.49
Bra024735.1-P	Field mustard	nucleus	56.53	60.48
CDX81561	Canola	nucleus	52.01	60.35
GSMUA_Achr10P...	Banana	nucleus	43.47	59.25
CDY45849	Canola	nucleus, plastid	51.76	58.86
Bra038346.1-P	Field mustard	nucleus, plastid	51.76	58.86
GSMUA_Achr4P03670_001	Banana	nucleus	43.22	58.5
GSMUA_Achr3P29380_001	Banana	nucleus	38.44	58.17
GSMUA_Achr1P05400_001	Banana	nucleus	43.47	58.05
GSMUA_Achr6P09880_001	Banana	nucleus	40.7	56.06
GSMUA_Achr2P22560_001	Banana	nucleus	42.21	54.19
TraesCS3D01G260100.1	Wheat	nucleus	50.5	53.74
TraesCS3A01G259900.1	Wheat	nucleus	50.25	53.33
TraesCS3B01G293000.1	Wheat	nucleus	51.26	53.26
Os05t0549800-01	Rice	nucleus	45.73	53.06
GSMUA_Achr4P06710_001	Banana	nucleus	46.23	52.57
HORVU3Hr1G064640.4	Barley	nucleus	49.75	52.11
HORVU4Hr1G074300.4	Barley	nucleus	19.6	52.0
GSMUA_Achr9P21470_001	Banana	nucleus	40.45	51.94
Zm00001d043782_P001	Maize	nucleus	50.5	51.67
Os01t0693400-01	Rice	nucleus	51.01	51.65
HORVU3Hr1G064590.1	Barley	nucleus	25.13	51.55
Zm00001d009468_P001	Maize	nucleus, plastid	47.74	50.67
TraesCS1D01G378900.1	Wheat	nucleus	49.5	50.26
TraesCS1A01G372300.1	Wheat	nucleus	49.5	50.26
TraesCS1B01G392300.1	Wheat	nucleus	49.25	50.13
HORVU1Hr1G082670.6	Barley	nucleus	48.99	49.62
GSMUA_AchrUn_...	Banana	nucleus	46.48	49.47
KXG22484	Sorghum	nucleus, plastid	50.5	49.26
EES03472	Sorghum	nucleus, plastid	51.01	49.15
Zm00001d038907_P001	Maize	nucleus, plastid	50.0	49.01
Zm00001d011639_P001	Maize	nucleus	49.25	48.4
TraesCS1B01G392000.1	Wheat	nucleus	49.5	47.93
TraesCS1D01G378400.1	Wheat	nucleus	48.49	46.84
TraesCS1A01G372200.1	Wheat	nucleus	48.49	46.73
TraesCS1B01G392200.1	Wheat	nucleus, plastid	48.74	46.63
TraesCS1D01G378500.1	Wheat	nucleus	48.99	46.54
TraesCS1D01G378800.1	Wheat	nucleus	48.49	46.51
TraesCS1A01G372100.1	Wheat	nucleus	48.24	43.44
GSMUA_Achr3P21100_001	Banana	nucleus	44.22	42.72
PGSC0003DMT400015010	Potato	nucleus	23.62	31.33
PGSC0003DMT400085602	Potato	nucleus	10.05	31.25
PGSC0003DMT400072354	Potato	nucleus	21.61	29.86
PGSC0003DMT400015011	Potato	nucleus	23.12	29.39
PGSC0003DMT400023077	Potato	nucleus	23.12	27.46
PGSC0003DMT400092316	Potato	nucleus	9.05	27.07
PGSC0003DMT400031863	Potato	nucleus	24.62	24.14
PGSC0003DMT400040900	Potato	nucleus	7.79	20.26

Protein Annotations

EntrezGene:102584696	MapMan:15.5.5.3	MapMan:15.5.7.5	Gene3D:2.40.330.10	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	InterPro:B3_DNA-bd	InterPro:DNA-bd_dom_sf	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR003340	InterPro:IPR015300	InterPro:IPR036955
UniProt:M0ZJN6	PFAM:PF00847	PFAM:PF02362	EnsemblPlantsGene:PGSC0003DMG400000811	PGSC:PGSC0003DMG400000811	EnsemblPlants:PGSC0003DMT400002125
PFscan:PS50863	PFscan:PS51032	PANTHER:PTHR31140	PANTHER:PTHR31140:SF21	SMART:SM00380	SMART:SM01019
SUPFAM:SSF101936	SUPFAM:SSF54171	UniParc:UPI0002959953	RefSeq:XP_006362535.1	SEG:seg	:

Description

RAV transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400000811]

Coordinates

chr5:+:2036553..2038068

Molecular Weight (calculated)

44808.2 Da

IEP (calculated)

9.947

GRAVY (calculated)

-0.584

Length

398 amino acids

Sequence
(BLAST)

001: MEGSISSIDQ ESTTSDSLSI APAASSSTMI KSLTMIKPPP ESGLCRMGSG TSVIIDAENG VEAESRKLPS SRYKGVVPQP NGRWGAQIYE KHQRVWLGTF
101: NEENEAARAY DVAAQRFRGR DAVTNFKPLL ENQESDDMEI AFLNSHSKAE IVDMLRKHTY LDELEQSKRL FGFTKDGMIK RKDGQIISSF FGSTNDKVNC
201: KAREQLFEKA VTPSDVGKLN RLVIPKQHAE KHFPLQNGNN SKGVLLNFED LNGKVWRFRY SYWNSSQSYV LTKGWSRFVK EKNLKAGDIV SFQRSTSGDK
301: QLYIDFKAKN VGNTSVVVTN QVQVQIQVPQ VQMVRLFGVN ICKVPANVSN VVIDNNNNNN NNNNNNMTSW SGGKRRMEME LLTFESCRKK QRVIINAL

Best Arabidopsis Sequence Match ( AT1G13260.1 )
(BLAST)

001: MESSSVDEST TSTGSICETP AITPAKKSSV GNLYRMGSGS SVVLDSENGV EAESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEDEAARAYD
101: VAVHRFRRRD AVTNFKDVKM DEDEVDFLNS HSKSEIVDML RKHTYNEELE QSKRRRNGNG NMTRTLLTSG LSNDGVSTTG FRSAEALFEK AVTPSDVGKL
201: NRLVIPKHHA EKHFPLPSSN VSVKGVLLNF EDVNGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKNLRAGD VVSFSRSNGQ DQQLYIGWKS RSGSDLDAGR
301: VLRLFGVNIS PESSRNDVVG NKRVNDTEML SLVCSKKQRI FHAS

Arabidopsis Description

RAV1AP2/ERF and B3 domain-containing transcription factor RAV1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZWM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.