Factsheet for GSMUA_Achr9P21470_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P03670_001	Banana	nucleus	59.68	62.93
GSMUA_Achr3P29380_001	Banana	nucleus	47.74	56.27
GSMUA_Achr10P...	Banana	nucleus	50.97	54.11
GSMUA_Achr4P06710_001	Banana	nucleus	57.42	50.86
GSMUA_Achr5P09950_001	Banana	nucleus	51.61	49.69
CDX97996	Canola	nucleus	48.39	46.15
CDY72302	Canola	nucleus	48.39	46.01
CDY61361	Canola	nucleus	48.39	45.87
CDY58354	Canola	nucleus	48.06	45.71
GSMUA_Achr1P21250_001	Banana	nucleus	42.9	45.24
GSMUA_Achr1P05400_001	Banana	nucleus	42.9	44.63
Bra026917.1-P	Field mustard	nucleus	48.71	44.41
Bra019821.1-P	Field mustard	nucleus	48.39	43.99
GSMUA_Achr6P09880_001	Banana	nucleus	40.97	43.94
CDY40973	Canola	nucleus	44.52	43.81
AT1G13260.1	Thale cress	nucleus	48.39	43.6
KRH34761	Soybean	nucleus	49.03	43.3
AT3G25730.1	Thale cress	nucleus	46.45	43.24
CDX83547	Canola	nucleus	45.16	43.21
GSMUA_Achr6P01420_001	Banana	nucleus	43.87	43.04
CDY24391	Canola	nucleus	46.45	42.6
VIT_01s0011g03070.t01	Wine grape	nucleus	51.61	42.33
CDX84999	Canola	nucleus	47.74	41.81
CDX99755	Canola	nucleus	45.81	41.76
Bra026509.1-P	Field mustard	nucleus	43.87	41.72
CDY36099	Canola	nucleus	46.77	41.43
KRG92025	Soybean	nucleus	48.06	41.16
AT1G25560.1	Thale cress	nucleus	47.74	41.0
GSMUA_Achr2P22560_001	Banana	nucleus	40.97	40.97
CDY16133	Canola	nucleus	47.1	40.78
AT1G68840.1	Thale cress	nucleus	46.13	40.62
KRH75484	Soybean	nucleus	50.32	40.62
CDX81561	Canola	nucleus	44.84	40.52
Solyc05g009790.1.1	Tomato	nucleus	51.61	40.51
PGSC0003DMT400002125	Potato	nucleus	51.94	40.45
Bra011002.1-P	Field mustard	nucleus	46.77	40.39
Bra024735.1-P	Field mustard	nucleus	47.42	39.52
Bra038346.1-P	Field mustard	nucleus, plastid	44.52	39.43
CDY45849	Canola	nucleus, plastid	44.52	39.43
KRH70603	Soybean	nucleus	50.0	38.65
GSMUA_AchrUn_...	Banana	nucleus	43.87	36.36
GSMUA_Achr3P21100_001	Banana	nucleus	42.9	32.28
GSMUA_Achr3P19210_001	Banana	nucleus	18.71	28.86
GSMUA_Achr9P02600_001	Banana	nucleus	17.74	28.5
GSMUA_Achr4P26430_001	Banana	nucleus	20.97	26.0
GSMUA_Achr9P08980_001	Banana	nucleus	12.9	24.69
GSMUA_Achr6P35600_001	Banana	nucleus	19.03	24.38
GSMUA_Achr4P30170_001	Banana	nucleus	19.35	24.1
GSMUA_Achr7P04630_001	Banana	nucleus	15.81	23.79
GSMUA_Achr6P13140_001	Banana	nucleus	18.39	23.08
GSMUA_Achr11P...	Banana	nucleus	13.23	22.16
GSMUA_AchrUn_...	Banana	cytosol	16.77	21.58
GSMUA_Achr1P03600_001	Banana	nucleus	22.26	20.91
GSMUA_Achr4P12210_001	Banana	nucleus	14.84	20.54
GSMUA_Achr4P24970_001	Banana	nucleus	15.48	20.43
GSMUA_Achr5P12850_001	Banana	nucleus	13.87	20.38
GSMUA_Achr11P...	Banana	nucleus	20.97	19.35
GSMUA_Achr8P14650_001	Banana	nucleus	25.16	18.84
GSMUA_Achr5P10220_001	Banana	nucleus	15.81	18.01
GSMUA_Achr5P20340_001	Banana	nucleus	19.35	17.8
GSMUA_Achr6P18320_001	Banana	nucleus	18.71	17.06
GSMUA_Achr9P18780_001	Banana	nucleus	15.48	16.78
GSMUA_Achr2P10230_001	Banana	nucleus	15.48	15.79
GSMUA_Achr2P00400_001	Banana	nucleus	14.52	15.62

Protein Annotations

MapMan:15.5.5.3	MapMan:15.5.7.5	Gene3D:2.40.330.10	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:B3_DNA-bd	InterPro:DNA-bd_dom_sf	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr9G21470_001	EnsemblPlants:GSMUA_Achr9P21470_001	EnsemblPlants:GSMUA_Achr9T21470_001	InterPro:IPR001471	InterPro:IPR003340
InterPro:IPR015300	InterPro:IPR036955	UniProt:M0U2A6	PFAM:PF00847	PFAM:PF02362	PFscan:PS50863
PFscan:PS51032	PANTHER:PTHR31140	PANTHER:PTHR31140:SF21	SMART:SM00380	SMART:SM01019	SUPFAM:SSF101936
SUPFAM:SSF54171	UniParc:UPI000294F273	SEG:seg	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G21470_001]

Coordinates

chr9:+:26590531..26591604

Molecular Weight (calculated)

35292.6 Da

IEP (calculated)

10.351

GRAVY (calculated)

-0.679

Length

310 amino acids

Sequence
(BLAST)

001: MRSPISYITP PFELVIEPLP NLFFRTFVHI FATSVQTDLF TRRDMETSSI GDAWGESGKR DESRKLPSSR YKGAVPQPNG RWGAQIYEKH QRVWLGTFNT
101: EAEAARAYDV AVRRFRGRDG VTNFKPLNES DDDDAAELSF IGSRSKVEIV DMLRRHSYHH ELQQSRRSFG ADKMKTAPSR GAAAGGGPSN GMLLNFEDAC
201: GRVWRFRYSY WNSSQSYVLT KGWSRFVKEK GLEAGDVVSF QRSTGPEKQL FIDSKARAGR GHTAVPMPRP PVQHFRLFGV NIARNPATHR DDMEFISSQD
301: MFKRQRTEAL

Best Arabidopsis Sequence Match ( AT1G13260.1 )
(BLAST)

001: MESSSVDEST TSTGSICETP AITPAKKSSV GNLYRMGSGS SVVLDSENGV EAESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEDEAARAYD
101: VAVHRFRRRD AVTNFKDVKM DEDEVDFLNS HSKSEIVDML RKHTYNEELE QSKRRRNGNG NMTRTLLTSG LSNDGVSTTG FRSAEALFEK AVTPSDVGKL
201: NRLVIPKHHA EKHFPLPSSN VSVKGVLLNF EDVNGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKNLRAGD VVSFSRSNGQ DQQLYIGWKS RSGSDLDAGR
301: VLRLFGVNIS PESSRNDVVG NKRVNDTEML SLVCSKKQRI FHAS

Arabidopsis Description

RAV1AP2/ERF and B3 domain-containing transcription factor RAV1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZWM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.