Factsheet for GSMUA_Achr6P01420_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P09950_001	Banana	nucleus	72.15	70.81
GSMUA_Achr1P05400_001	Banana	nucleus	58.23	61.74
GSMUA_AchrUn_...	Banana	nucleus	65.82	55.62
GSMUA_Achr1P21250_001	Banana	nucleus	50.0	53.74
HORVU4Hr1G074300.4	Barley	nucleus	25.32	53.33
HORVU3Hr1G064590.1	Barley	nucleus	32.59	53.09
GSMUA_Achr3P29380_001	Banana	nucleus	43.67	52.47
GSMUA_Achr2P22560_001	Banana	nucleus	48.42	49.35
GSMUA_Achr4P06710_001	Banana	nucleus	54.43	49.14
GSMUA_Achr4P03670_001	Banana	nucleus	44.94	48.3
GSMUA_Achr6P09880_001	Banana	nucleus	43.35	47.4
GSMUA_Achr10P...	Banana	nucleus	41.77	45.21
GSMUA_Achr9P21470_001	Banana	nucleus	43.04	43.87
TraesCS3D01G260100.1	Wheat	nucleus	51.9	43.85
TraesCS3A01G259900.1	Wheat	nucleus	51.9	43.73
Os05t0549800-01	Rice	nucleus	47.15	43.44
GSMUA_Achr3P19210_001	Banana	nucleus	27.53	43.28
TraesCS3B01G293000.1	Wheat	nucleus	52.22	43.08
TraesCS1B01G392300.1	Wheat	nucleus	53.16	42.97
Zm00001d009468_P001	Maize	nucleus, plastid	50.95	42.93
HORVU3Hr1G064640.4	Barley	nucleus	51.58	42.89
TraesCS1D01G378900.1	Wheat	nucleus	53.16	42.86
Zm00001d043782_P001	Maize	nucleus	51.9	42.16
TraesCS1A01G372300.1	Wheat	nucleus	52.22	42.09
GSMUA_Achr9P02600_001	Banana	nucleus	25.63	41.97
Zm00001d038907_P001	Maize	nucleus, plastid	53.48	41.63
HORVU1Hr1G082670.6	Barley	nucleus	51.58	41.48
KXG22484	Sorghum	nucleus, plastid	53.48	41.42
Os01t0693400-01	Rice	nucleus	50.95	40.97
TraesCS1B01G392000.1	Wheat	nucleus	52.53	40.39
TraesCS1D01G378400.1	Wheat	nucleus	52.53	40.29
TraesCS1A01G372200.1	Wheat	nucleus	52.22	39.95
EES03472	Sorghum	nucleus, plastid	51.9	39.71
TraesCS1D01G378500.1	Wheat	nucleus	52.53	39.62
Zm00001d011639_P001	Maize	nucleus	50.63	39.51
TraesCS1D01G378800.1	Wheat	nucleus	51.58	39.28
TraesCS1B01G392200.1	Wheat	nucleus, plastid	51.58	39.18
GSMUA_Achr3P21100_001	Banana	nucleus	50.63	38.84
GSMUA_Achr9P08980_001	Banana	nucleus	19.3	37.65
TraesCS1A01G372100.1	Wheat	nucleus	52.22	37.33
GSMUA_Achr6P35600_001	Banana	nucleus	28.48	37.19
GSMUA_Achr4P26430_001	Banana	nucleus	27.85	35.2
GSMUA_Achr4P30170_001	Banana	nucleus	27.53	34.94
GSMUA_Achr11P...	Banana	nucleus	20.25	34.59
GSMUA_Achr6P13140_001	Banana	nucleus	26.58	34.01
GSMUA_Achr5P12850_001	Banana	nucleus	22.47	33.65
GSMUA_Achr7P04630_001	Banana	nucleus	21.52	33.01
GSMUA_Achr1P03600_001	Banana	nucleus	32.28	30.91
GSMUA_AchrUn_...	Banana	cytosol	23.42	30.71
GSMUA_Achr4P24970_001	Banana	nucleus	22.78	30.64
GSMUA_Achr4P12210_001	Banana	nucleus	19.94	28.12
GSMUA_Achr5P20340_001	Banana	nucleus	28.8	27.0
GSMUA_Achr5P10220_001	Banana	nucleus	22.78	26.47
GSMUA_Achr2P00400_001	Banana	nucleus	24.05	26.39
GSMUA_Achr2P10230_001	Banana	nucleus	24.68	25.66
GSMUA_Achr9P18780_001	Banana	nucleus	23.1	25.52
GSMUA_Achr6P18320_001	Banana	nucleus	25.95	24.12
GSMUA_Achr8P14650_001	Banana	nucleus	28.16	21.5
GSMUA_Achr11P...	Banana	nucleus	22.15	20.83

Protein Annotations

MapMan:15.5.5.3	MapMan:15.5.7.5	Gene3D:2.40.330.10	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:B3_DNA-bd	InterPro:DNA-bd_dom_sf	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr6G01420_001	EnsemblPlants:GSMUA_Achr6P01420_001	EnsemblPlants:GSMUA_Achr6T01420_001	InterPro:IPR001471	InterPro:IPR003340
InterPro:IPR015300	InterPro:IPR036955	UniProt:M0T390	PFAM:PF00847	PFAM:PF02362	PRINTS:PR00367
PFscan:PS50863	PFscan:PS51032	PANTHER:PTHR31140	PANTHER:PTHR31140:SF21	SMART:SM00380	SMART:SM01019
SUPFAM:SSF101936	SUPFAM:SSF54171	UniParc:UPI000294FC23	SEG:seg	:	:

Description

AP2/ERF and B3 domain-containing transcription factor RAV1 [Source:GMGC_GENE;Acc:GSMUA_Achr6G01420_001]

Coordinates

chr6:+:933694..934755

Molecular Weight (calculated)

35429.0 Da

IEP (calculated)

9.710

GRAVY (calculated)

-0.611

Length

316 amino acids

Sequence
(BLAST)

001: METSGSEQVC SETEKQSPPP RPSPGGLLRL GSGTSVVLDP EVILEAKLRK LPSSQYKGVV PQPNGRWGAQ IYEKHQRVWL GTFNEEDEAA RAYDAEIVDM
101: LRKHTYYDEL QQSRRNSGAD RSKPCPSHEE TFGRVYREHL FDKAVTPSDV GKLNRLVIPK QHAEKHFPLQ QTSDAACKGL LLNFEDACGK VWRFRYSYWN
201: SSQSYVLTKG WSRFVKEKEL RAGDVITFQR STGPENQLFI GCRRRSVGRY AAAGVHAPTT PVEAVRLFGV NIVKIPVAVS GGVMDGDGIG WNGKRSRDMG
301: LISSRELFKR QSTQAL

Best Arabidopsis Sequence Match ( AT1G68840.2 )
(BLAST)

001: MDSSCIDEIS SSTSESFSAT TAKKLSPPPA AALRLYRMGS GGSSVVLDPE NGLETESRKL PSSKYKGVVP QPNGRWGAQI YEKHQRVWLG TFNEQEEAAR
101: SYDIAACRFR GRDAVVNFKN VLEDGDLAFL EAHSKAEIVD MLRKHTYADE LEQNNKRQLF LSVDANGKRN GSSTTQNDKV LKTREVLFEK AVTPSDVGKL
201: NRLVIPKQHA EKHFPLPSPS PAVTKGVLIN FEDVNGKVWR FRYSYWNSSQ SYVLTKGWSR FVKEKNLRAG DVVTFERSTG LERQLYIDWK VRSGPRENPV
301: QVVVRLFGVD IFNVTTVKPN DVVAVCGGKR SRDVDDMFAL RCSKKQAIIN AL

Arabidopsis Description

RAV2TEM2 [Source:UniProtKB/TrEMBL;Acc:A0A178WNP0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.