CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038907_P001	Maize	nucleus, plastid	87.01	87.44
Os05t0549800-01	Rice	nucleus	64.95	77.26
TraesCS1B01G392300.1	Wheat	nucleus	71.32	74.42
TraesCS1D01G378900.1	Wheat	nucleus	71.32	74.23
TraesCS1A01G372300.1	Wheat	nucleus	71.08	73.98
HORVU1Hr1G082670.6	Barley	nucleus	69.12	71.76
TraesCS1B01G392000.1	Wheat	nucleus	71.08	70.56
TraesCS1D01G378400.1	Wheat	nucleus	70.59	69.9
TraesCS1D01G378800.1	Wheat	nucleus	70.59	69.4
TraesCS1A01G372200.1	Wheat	nucleus	69.12	68.28
TraesCS1D01G378500.1	Wheat	nucleus	69.85	68.02
EES03472	Sorghum	nucleus, plastid	68.63	67.8
TraesCS1B01G392200.1	Wheat	nucleus, plastid	69.12	67.79
TraesCS1A01G372100.1	Wheat	nucleus	69.85	64.48
GSMUA_Achr1P21250_001	Banana	nucleus	44.61	61.9
CDX97996	Canola	nucleus	47.3	59.38
CDY61361	Canola	nucleus	47.06	58.72
CDY58354	Canola	nucleus	46.57	58.28
CDY72302	Canola	nucleus	46.32	57.98
KRH34761	Soybean	nucleus	49.51	57.55
Bra019821.1-P	Field mustard	nucleus	47.55	56.89
CDX81561	Canola	nucleus	47.55	56.56
CDY40973	Canola	nucleus	43.63	56.51
Bra026917.1-P	Field mustard	nucleus	47.06	56.47
CDY36099	Canola	nucleus	48.28	56.29
CDY24391	Canola	nucleus	46.32	55.92
KRG92025	Soybean	nucleus	49.51	55.8
Bra038346.1-P	Field mustard	nucleus, plastid	47.79	55.71
CDY45849	Canola	nucleus, plastid	47.79	55.71
AT1G68840.1	Thale cress	nucleus	48.04	55.68
AT1G13260.1	Thale cress	nucleus	46.81	55.52
HORVU4Hr1G074300.4	Barley	nucleus	20.34	55.33
AT3G25730.1	Thale cress	nucleus	45.1	55.26
CDX84999	Canola	nucleus	47.79	55.08
Bra011002.1-P	Field mustard	nucleus	48.28	54.87
CDY16133	Canola	nucleus	48.04	54.75
Bra026509.1-P	Field mustard	nucleus	42.89	53.68
KRH75484	Soybean	nucleus	50.49	53.65
GSMUA_Achr6P01420_001	Banana	nucleus	41.42	53.48
CDX99755	Canola	nucleus	44.36	53.24
AT1G25560.1	Thale cress	nucleus	47.06	53.19
Bra024735.1-P	Field mustard	nucleus	48.04	52.69
VIT_01s0011g03070.t01	Wine grape	nucleus	48.53	52.38
KRH70603	Soybean	nucleus	50.49	51.37
Solyc05g009790.1.1	Tomato	nucleus	49.26	50.89
PGSC0003DMT400002125	Potato	nucleus	49.26	50.5
CDX83547	Canola	nucleus	39.95	50.31
OQU77426	Sorghum	nucleus	18.63	47.2
EES02511	Sorghum	nucleus	44.85	47.16
KXG19112	Sorghum	nucleus	18.87	37.56
KXG19111	Sorghum	nucleus	20.59	35.29
EER92015	Sorghum	nucleus	23.28	34.67
KXG27771	Sorghum	nucleus	22.3	33.21
EES13386	Sorghum	nucleus	20.1	32.41
OQU93364	Sorghum	nucleus	25.0	30.91
KXG22988	Sorghum	plastid	22.79	29.06
EES14747	Sorghum	plastid	18.38	26.88
EES12712	Sorghum	nucleus	27.45	26.67
EES07445	Sorghum	nucleus	27.7	26.04
KXG24821	Sorghum	nucleus	17.89	25.61

Protein Annotations

MapMan:15.5.5.3	MapMan:15.5.7.5	Gene3D:2.40.330.10	Gene3D:3.30.730.10	UniProt:A0A1B6P9U1	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	InterPro:B3_DNA-bd	InterPro:DNA-bd_dom_sf	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR003340	InterPro:IPR015300	InterPro:IPR036955
EnsemblPlants:KXG22484	ProteinID:KXG22484	ProteinID:KXG22484.1	PFAM:PF00847	PFAM:PF02362	PFscan:PS50863
PFscan:PS51032	PANTHER:PTHR31140	PANTHER:PTHR31140:SF21	SMART:SM00380	SMART:SM01019	EnsemblPlantsGene:SORBI_3009G221400
SUPFAM:SSF101936	SUPFAM:SSF54171	UniParc:UPI0003C7146A	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr9:+:56455661..56457180

Molecular Weight (calculated)

43038.8 Da

IEP (calculated)

10.069

GRAVY (calculated)

-0.314

Length

408 amino acids

Sequence
(BLAST)

001: MDSTSCLLDD ASSGASTGNK NPAPAPAAAT GGKPLQRVGS GASAVMDAAE PGAEADSGSG GAGRATGGCG VVSGNGKLPS SKYKGVVPQP NGRWGAQIYE
101: RHQRVWLGTF TGEAEAARAY DVAAQRFRGR DAVTNFRPLA ESDPEAAVEL RFLASRTKAE VVDMLRKHTY GEELAQNRRA FAAASPAASP PPAKNNNPAA
201: SSSSPTAVTA REHLFDKTVT PSDVGKLNRL VIPKQHAEKH FPLQLPAAAA AVVGGECKGV LLNFEDATGK VWRFRYSYWN SSQSYVLTKG WSRFVKEKGL
301: HAGDAVGFYR SAGGKQQFFI DCKLRPKTTT TAASFVNATT TTAAPSPVKA VRLFGVDLLT TPRPGPAVVA APEQEEIAMA NKRARDAIAA CTPVHMVFKK
401: QCIYFALT

Best Arabidopsis Sequence Match ( AT1G68840.2 )
(BLAST)

001: MDSSCIDEIS SSTSESFSAT TAKKLSPPPA AALRLYRMGS GGSSVVLDPE NGLETESRKL PSSKYKGVVP QPNGRWGAQI YEKHQRVWLG TFNEQEEAAR
101: SYDIAACRFR GRDAVVNFKN VLEDGDLAFL EAHSKAEIVD MLRKHTYADE LEQNNKRQLF LSVDANGKRN GSSTTQNDKV LKTREVLFEK AVTPSDVGKL
201: NRLVIPKQHA EKHFPLPSPS PAVTKGVLIN FEDVNGKVWR FRYSYWNSSQ SYVLTKGWSR FVKEKNLRAG DVVTFERSTG LERQLYIDWK VRSGPRENPV
301: QVVVRLFGVD IFNVTTVKPN DVVAVCGGKR SRDVDDMFAL RCSKKQAIIN AL

Arabidopsis Description

RAV2TEM2 [Source:UniProtKB/TrEMBL;Acc:A0A178WNP0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.