Factsheet for Zm00001d038907_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG22484	Sorghum	nucleus, plastid	87.44	87.01
Zm00001d009468_P001	Maize	nucleus, plastid	74.14	80.27
Os05t0549800-01	Rice	nucleus	66.26	78.43
Zm00001d043782_P001	Maize	nucleus	68.97	71.98
Zm00001d035982_P001	Maize	nucleus	14.53	67.05
Zm00001d011639_P001	Maize	nucleus	66.5	66.67
GSMUA_Achr1P21250_001	Banana	nucleus	45.07	62.24
CDX97996	Canola	nucleus	47.04	58.77
CDY61361	Canola	nucleus	47.04	58.41
CDY72302	Canola	nucleus	46.31	57.67
CDY58354	Canola	nucleus	46.31	57.67
CDY40973	Canola	nucleus	43.84	56.51
KRH34761	Soybean	nucleus	48.77	56.41
Bra019821.1-P	Field mustard	nucleus	47.29	56.3
Bra026917.1-P	Field mustard	nucleus	47.04	56.18
AT1G13260.1	Thale cress	nucleus	47.04	55.52
CDY24391	Canola	nucleus	46.06	55.33
AT1G68840.1	Thale cress	nucleus	47.78	55.11
CDX81561	Canola	nucleus	46.31	54.81
KRG92025	Soybean	nucleus	48.77	54.7
CDY36099	Canola	nucleus	47.04	54.57
CDX84999	Canola	nucleus	47.54	54.52
AT3G25730.1	Thale cress	nucleus	44.58	54.35
CDY16133	Canola	nucleus	47.78	54.19
Bra038346.1-P	Field mustard	nucleus, plastid	46.55	54.0
CDY45849	Canola	nucleus, plastid	46.55	54.0
Bra026509.1-P	Field mustard	nucleus	43.1	53.68
GSMUA_Achr6P01420_001	Banana	nucleus	41.63	53.48
Bra011002.1-P	Field mustard	nucleus	47.04	53.2
CDX99755	Canola	nucleus	44.34	52.94
AT1G25560.1	Thale cress	nucleus	47.04	52.91
VIT_01s0011g03070.t01	Wine grape	nucleus	48.77	52.38
KRH75484	Soybean	nucleus	49.51	52.34
Bra024735.1-P	Field mustard	nucleus	47.78	52.15
CDX83547	Canola	nucleus	40.64	50.93
KRH70603	Soybean	nucleus	50.0	50.62
Solyc05g009790.1.1	Tomato	nucleus	49.01	50.38
PGSC0003DMT400002125	Potato	nucleus	49.01	50.0
Zm00001d039907_P001	Maize	nucleus	45.32	48.68
Zm00001d048815_P001	Maize	nucleus	23.15	40.52
Zm00001d035903_P001	Maize	nucleus	21.18	38.39
Zm00001d024103_P001	Maize	nucleus	20.69	37.5
Zm00001d010077_P001	Maize	nucleus	23.4	36.68
Zm00001d029749_P001	Maize	nucleus	23.4	34.8
Zm00001d047359_P001	Maize	nucleus	23.4	34.3
Zm00001d023446_P001	Maize	nucleus	23.65	33.92
Zm00001d024545_P001	Maize	nucleus	20.44	33.33
Zm00001d027409_P001	Maize	nucleus	24.63	30.58
Zm00001d052591_P001	Maize	nucleus	22.66	29.97
Zm00001d024354_P001	Maize	nucleus, plastid	20.69	29.47
Zm00001d002562_P001	Maize	nucleus	28.08	27.87
Zm00001d017618_P001	Maize	nucleus	28.57	27.49
Zm00001d026005_P001	Maize	nucleus	26.85	26.98
Zm00001d051471_P001	Maize	nucleus	26.85	25.95

Protein Annotations

EntrezGene:100273875	MapMan:15.5.5.3	MapMan:15.5.7.5	Gene3D:2.40.330.10	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	ProteinID:AQK88209.1	InterPro:B3_DNA-bd	UniProt:B4FXX4	EMBL:BT041962	InterPro:DNA-bd_dom_sf
InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471
InterPro:IPR003340	InterPro:IPR015300	InterPro:IPR036955	PFAM:PF00847	PFAM:PF02362	PFscan:PS50863
PFscan:PS51032	PANTHER:PTHR31140	PANTHER:PTHR31140:SF21	SMART:SM00380	SMART:SM01019	SUPFAM:SSF101936
SUPFAM:SSF54171	UniParc:UPI00017B82CE	EnsemblPlantsGene:Zm00001d038907	EnsemblPlants:Zm00001d038907_P001	EnsemblPlants:Zm00001d038907_T001	SEG:seg

Description

AP2-EREBP-transcription factor 162AP2/ERF and B3 domain-containing transcription repressor TEM1

Coordinates

chr6:+:166776865..166778085

Molecular Weight (calculated)

42896.6 Da

IEP (calculated)

10.315

GRAVY (calculated)

-0.370

Length

406 amino acids

Sequence
(BLAST)

001: MDSTSCLVDD ASSGASTGKK PAPAPAAATG KPLQRVGSGT SAVMDAAEPG AEADSGGAGR APGGVSGKLP SSKYKGVVPQ PNGRWGAQIY ERHQRVWLGT
101: FTGEAEAARA YDVAAQRFRG RDAVTNFRPL AESEPEAAVE LRFLASRSKA EVVDMLRKHT YGEELAHNRR AFAAASPAAS PPPENNRRPP AASSSSSPAA
201: AREHLFDKTV TPSDVGKLNR LVIPKQHAEK HFPLQLPAAA AAGVGSGGEC KGVLLNFEDA AGKAWRFRYS YWNSSQSYVL TKGWSRFVKE KGLHAGDAVG
301: FYRSAGGKQQ LFIDCKLRPN KTTTTAAAFV NVNAMTTTAA PPLAAVKAVR LFGVDLLTTP RPAAVAPEQE EVTVANKRAR DAMATAASTP APVHMVFKKQ
401: CIDFAR

Best Arabidopsis Sequence Match ( AT1G68840.2 )
(BLAST)

001: MDSSCIDEIS SSTSESFSAT TAKKLSPPPA AALRLYRMGS GGSSVVLDPE NGLETESRKL PSSKYKGVVP QPNGRWGAQI YEKHQRVWLG TFNEQEEAAR
101: SYDIAACRFR GRDAVVNFKN VLEDGDLAFL EAHSKAEIVD MLRKHTYADE LEQNNKRQLF LSVDANGKRN GSSTTQNDKV LKTREVLFEK AVTPSDVGKL
201: NRLVIPKQHA EKHFPLPSPS PAVTKGVLIN FEDVNGKVWR FRYSYWNSSQ SYVLTKGWSR FVKEKNLRAG DVVTFERSTG LERQLYIDWK VRSGPRENPV
301: QVVVRLFGVD IFNVTTVKPN DVVAVCGGKR SRDVDDMFAL RCSKKQAIIN AL

Arabidopsis Description

RAV2TEM2 [Source:UniProtKB/TrEMBL;Acc:A0A178WNP0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.