Factsheet for Bra026509.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
nucleus 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40973	Canola	nucleus	94.79	98.1
CDX99755	Canola	nucleus	91.72	87.94
AT3G25730.1	Thale cress	nucleus	78.83	77.18
CDX83547	Canola	nucleus	76.69	77.16
Bra019821.1-P	Field mustard	nucleus	72.39	69.21
Bra026917.1-P	Field mustard	nucleus	71.17	68.24
Bra038346.1-P	Field mustard	nucleus, plastid	59.2	55.14
Bra024735.1-P	Field mustard	nucleus	62.88	55.11
Bra011002.1-P	Field mustard	nucleus	60.43	54.87
GSMUA_Achr1P05400_001	Banana	nucleus	49.08	53.69
GSMUA_Achr5P09950_001	Banana	nucleus	52.45	53.11
KRH34761	Soybean	nucleus	57.06	52.99
VIT_01s0011g03070.t01	Wine grape	nucleus	61.04	52.65
KRG92025	Soybean	nucleus	57.36	51.66
GSMUA_Achr10P...	Banana	nucleus	46.01	51.37
Solyc05g009790.1.1	Tomato	nucleus	60.74	50.13
PGSC0003DMT400002125	Potato	nucleus	61.04	50.0
GSMUA_Achr4P03670_001	Banana	nucleus	45.09	50.0
KRH75484	Soybean	nucleus	58.59	49.74
GSMUA_Achr6P09880_001	Banana	nucleus	43.87	49.48
GSMUA_Achr2P22560_001	Banana	nucleus	46.93	49.35
KRH70603	Soybean	nucleus	59.82	48.63
GSMUA_Achr3P29380_001	Banana	nucleus	38.65	47.91
TraesCS3D01G260100.1	Wheat	nucleus	54.91	47.86
HORVU4Hr1G074300.4	Barley	nucleus	21.78	47.33
TraesCS3A01G259900.1	Wheat	nucleus	54.29	47.2
TraesCS3B01G293000.1	Wheat	nucleus	55.21	47.0
HORVU3Hr1G064640.4	Barley	nucleus	53.99	46.32
Zm00001d009468_P001	Maize	nucleus, plastid	52.76	45.87
Os01t0693400-01	Rice	nucleus	54.91	45.55
Zm00001d043782_P001	Maize	nucleus	53.99	45.24
Os05t0549800-01	Rice	nucleus	47.55	45.19
GSMUA_Achr4P06710_001	Banana	nucleus	47.85	44.57
TraesCS1B01G392300.1	Wheat	nucleus	53.37	44.5
TraesCS1D01G378900.1	Wheat	nucleus	53.07	44.13
TraesCS1A01G372300.1	Wheat	nucleus	53.07	44.13
GSMUA_Achr9P21470_001	Banana	nucleus	41.72	43.87
Zm00001d038907_P001	Maize	nucleus, plastid	53.68	43.1
EES03472	Sorghum	nucleus, plastid	54.6	43.1
HORVU1Hr1G082670.6	Barley	nucleus	51.84	43.0
KXG22484	Sorghum	nucleus, plastid	53.68	42.89
HORVU3Hr1G064590.1	Barley	nucleus	25.46	42.78
GSMUA_AchrUn_...	Banana	nucleus	48.47	42.25
Zm00001d011639_P001	Maize	nucleus	52.45	42.22
TraesCS1B01G392000.1	Wheat	nucleus	52.76	41.85
TraesCS1D01G378400.1	Wheat	nucleus	52.76	41.75
TraesCS1A01G372200.1	Wheat	nucleus	52.76	41.65
TraesCS1B01G392200.1	Wheat	nucleus, plastid	53.07	41.59
TraesCS1D01G378500.1	Wheat	nucleus	52.76	41.05
TraesCS1D01G378800.1	Wheat	nucleus	52.15	40.96
TraesCS1A01G372100.1	Wheat	nucleus	52.15	38.46
GSMUA_Achr3P21100_001	Banana	nucleus	45.71	36.16
Bra001411.1-P	Field mustard	nucleus	23.62	32.63
Bra005301.1-P	Field mustard	nucleus	24.54	32.26
Bra017262.1-P	Field mustard	nucleus	24.23	32.24
Bra030458.1-P	Field mustard	nucleus	30.37	31.33
Bra018894.1-P	Field mustard	nucleus	30.98	29.88
Bra018854.1-P	Field mustard	nucleus	30.67	29.41
Bra018868.1-P	Field mustard	nucleus	30.37	29.29
Bra030476.1-P	Field mustard	nucleus	29.14	29.23
Bra014282.1-P	Field mustard	nucleus	30.37	29.2
Bra041023.1-P	Field mustard	nucleus	23.62	29.17
Bra034828.1-P	Field mustard	nucleus	23.01	29.07
Bra005886.1-P	Field mustard	nucleus	23.62	28.84
Bra018869.1-P	Field mustard	nucleus	28.53	27.84
Bra004501.1-P	Field mustard	nucleus	24.85	27.27
Bra040478.1-P	Field mustard	nucleus	23.62	26.28
Bra003482.1-P	Field mustard	nucleus	23.01	26.22
Bra007646.1-P	Field mustard	nucleus	23.01	25.68
Bra000434.1-P	Field mustard	nucleus	24.23	25.48
Bra008552.1-P	Field mustard	nucleus	25.15	24.26
Bra033294.1-P	Field mustard	nucleus	25.15	23.84
Bra014415.1-P	Field mustard	nucleus	23.31	23.75
Bra030497.1-P	Field mustard	nucleus	25.77	23.73
Bra037417.1-P	Field mustard	nucleus	21.47	22.58
Bra009171.1-P	Field mustard	nucleus	15.03	20.5

Protein Annotations

MapMan:15.5.5.3	MapMan:15.5.7.5	Gene3D:2.40.330.10	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:B3_DNA-bd	EnsemblPlantsGene:Bra026509	EnsemblPlants:Bra026509.1	EnsemblPlants:Bra026509.1-P	InterPro:DNA-bd_dom_sf	InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	GO:GO:0044212
InterPro:IPR001471	InterPro:IPR003340	InterPro:IPR015300	InterPro:IPR036955	UniProt:M4ECJ9	PFAM:PF00847
PFAM:PF02362	PFscan:PS50863	PFscan:PS51032	PANTHER:PTHR31140	PANTHER:PTHR31140:SF9	SMART:SM00380
SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54171	UniParc:UPI00025464D2	SEG:seg	:

Description

AT3G25730 (E=4e-130) | AP2 domain-containing transcription factor, putative

Coordinates

chrA02:-:19729737..19730717

Molecular Weight (calculated)

36581.2 Da

IEP (calculated)

9.862

GRAVY (calculated)

-0.603

Length

326 amino acids

Sequence
(BLAST)

001: MEAVSSVDES STSTVSIHTS AKIIPPPTTA KLSSPASLYR MGSGSSVVLD SENGVEAESR KLPSSKFKGV VPQPNGRWGA QIYEKHKRVW LGTFNEEEEA
101: ARVYDVAAHR FRGPDAVTNF KLDATFRNGD GEEVEFLNAH SKYEIVDMLR KHTYKEELEQ RKRKRNGGNG DTKETAFANV TVVTGFKTAE CLFEKTVTPS
201: DVGKLNRLVI PKHQAEKHFP LPLTGDDSVR GTLLNFEDVN GKVWRFRYSY WNSSQSYVLT RGWSRFVKEK RLCAGDLISF KRSNGQDQEL YIGWKSKAGL
301: EQDTGRVVVR LFGVDIASIK SRKTMS

Best Arabidopsis Sequence Match ( AT3G25730.1 )
(BLAST)

001: MDAMSSVDES STTTDSIPAR KSSSPASLLY RMGSGTSVVL DSENGVEVEV EAESRKLPSS RFKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEDEAARAYD
101: VAAHRFRGRD AVTNFKDTTF EEEVEFLNAH SKSEIVDMLR KHTYKEELDQ RKRNRDGNGK ETTAFALASM VVMTGFKTAE LLFEKTVTPS DVGKLNRLVI
201: PKHQAEKHFP LPLGNNNVSV KGMLLNFEDV NGKVWRFRYS YWNSSQSYVL TKGWSRFVKE KRLCAGDLIS FKRSNDQDQK FFIGWKSKSG LDLETGRVMR
301: LFGVDISLNA VVVVKETTEV LMSSLRCKKQ RVL

Arabidopsis Description

ARF14AP2/ERF and B3 domain-containing transcription factor ARF14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LS06]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.