Factsheet for TraesCS3D01G260100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G293000.1	Wheat	nucleus	96.52	94.26
TraesCS3A01G259900.1	Wheat	nucleus	93.85	93.6
HORVU3Hr1G064640.4	Barley	nucleus	90.11	88.68
HORVU3Hr1G064590.1	Barley	nucleus	44.38	85.57
Os01t0693400-01	Rice	nucleus	83.69	79.64
Zm00001d043782_P001	Maize	nucleus	81.02	77.89
EES03472	Sorghum	nucleus, plastid	82.09	74.33
Zm00001d011639_P001	Maize	nucleus	78.88	72.84
TraesCS1D01G378900.1	Wheat	nucleus	71.12	67.86
TraesCS1D01G378400.1	Wheat	nucleus	68.45	62.14
TraesCS1D01G378800.1	Wheat	nucleus	67.91	61.2
GSMUA_Achr1P21250_001	Banana	nucleus	47.86	60.88
TraesCS1D01G378500.1	Wheat	nucleus	67.65	60.38
CDX97996	Canola	nucleus	50.8	58.46
CDY61361	Canola	nucleus	50.53	57.8
CDY40973	Canola	nucleus	48.4	57.46
CDY72302	Canola	nucleus	50.0	57.36
CDY36099	Canola	nucleus	53.48	57.14
CDY24391	Canola	nucleus	51.6	57.1
CDX84999	Canola	nucleus	54.01	57.06
CDY58354	Canola	nucleus	49.73	57.06
CDY16133	Canola	nucleus	54.28	56.7
TraesCS4D01G322500.1	Wheat	nucleus	45.99	56.39
Bra019821.1-P	Field mustard	nucleus	50.8	55.72
CDX81561	Canola	nucleus	51.07	55.69
KRH34761	Soybean	nucleus	52.14	55.56
Bra011002.1-P	Field mustard	nucleus	53.21	55.43
AT1G68840.1	Thale cress	nucleus	52.14	55.4
Bra026917.1-P	Field mustard	nucleus	50.27	55.29
AT3G25730.1	Thale cress	nucleus	49.2	55.26
AT1G13260.1	Thale cress	nucleus	50.53	54.94
Bra026509.1-P	Field mustard	nucleus	47.86	54.91
Bra038346.1-P	Field mustard	nucleus, plastid	51.34	54.86
CDY45849	Canola	nucleus, plastid	51.34	54.86
Bra024735.1-P	Field mustard	nucleus	54.01	54.3
KRG92025	Soybean	nucleus	52.41	54.14
AT1G25560.1	Thale cress	nucleus	52.14	54.02
VIT_01s0011g03070.t01	Wine grape	nucleus	54.28	53.7
CDX99755	Canola	nucleus	48.66	53.53
GSMUA_Achr6P01420_001	Banana	nucleus	43.85	51.9
KRH75484	Soybean	nucleus	52.94	51.56
CDX83547	Canola	nucleus	44.65	51.54
TraesCS3D01G052300.1	Wheat	nucleus	48.4	50.84
PGSC0003DMT400002125	Potato	nucleus	53.74	50.5
TraesCS3D01G052400.1	Wheat	nucleus	47.59	50.42
Solyc05g009790.1.1	Tomato	nucleus	53.21	50.38
KRH70603	Soybean	nucleus	53.48	49.88
TraesCS4D01G322600.1	Wheat	nucleus	45.72	47.24
TraesCS7D01G448900.1	Wheat	nucleus	21.93	41.84
TraesCS7D01G017000.1	Wheat	nucleus	23.26	40.09
TraesCS5D01G134700.1	Wheat	nucleus	25.13	35.34
TraesCS2D01G460900.1	Wheat	nucleus	24.87	34.83
TraesCS4D01G114900.1	Wheat	nucleus	24.6	32.62
TraesCS1D01G203900.1	Wheat	nucleus	25.13	32.3
TraesCS6D01G240600.1	Wheat	nucleus	30.75	27.78
TraesCS2D01G392400.1	Wheat	nucleus	30.21	27.63

Protein Annotations

MapMan:15.5.5.3	MapMan:15.5.7.5	Gene3D:2.40.330.10	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:B3_DNA-bd	InterPro:DNA-bd_dom_sf	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR003340	InterPro:IPR015300	InterPro:IPR036955
PFAM:PF00847	PFAM:PF02362	PFscan:PS50863	PFscan:PS51032	PANTHER:PTHR31140	PANTHER:PTHR31140:SF21
SMART:SM00380	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS3D01G260100	EnsemblPlants:TraesCS3D01G260100.1
TIGR:cd00018	TIGR:cd10017	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3D:-:362069410..362070552

Molecular Weight (calculated)

39437.5 Da

IEP (calculated)

9.874

GRAVY (calculated)

-0.330

Length

374 amino acids

Sequence
(BLAST)

001: MDSTSCLADD TSSGGGASTD KLKALAAAAA AAAGPLERMG SGASAVLDAA EPGSEADSGG RAAGKLPSSR FKGVVPQPNG RWGAQIYERH QRVWLGTFAG
101: EADAARAYDV AAQRFRGRDA VTNFRPLADA DPDAAAELRF LAARSKAEVV DMLRKHTYFD ELAQSKRALA ASAALSAPTT SRGAASTPSP AAAREHLFDK
201: TVTPSDVGKL NRLVIPKQHA EKHFPLQLPA AGGESKGLLL NFEDAAGKVW RFRYSYWNSS QSYVLTKGWS RFVKEKGLGA GDVVGFYRAA AGEDSKLFID
301: CKQRPSTNSP APADPVDQPA VPVKKAVRLF GVDLLTAPAS PEQGMPGCKR ARDLVKSPPP TAAFKKQCIE LALA

Best Arabidopsis Sequence Match ( AT1G13260.1 )
(BLAST)

001: MESSSVDEST TSTGSICETP AITPAKKSSV GNLYRMGSGS SVVLDSENGV EAESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEDEAARAYD
101: VAVHRFRRRD AVTNFKDVKM DEDEVDFLNS HSKSEIVDML RKHTYNEELE QSKRRRNGNG NMTRTLLTSG LSNDGVSTTG FRSAEALFEK AVTPSDVGKL
201: NRLVIPKHHA EKHFPLPSSN VSVKGVLLNF EDVNGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKNLRAGD VVSFSRSNGQ DQQLYIGWKS RSGSDLDAGR
301: VLRLFGVNIS PESSRNDVVG NKRVNDTEML SLVCSKKQRI FHAS

Arabidopsis Description

RAV1AP2/ERF and B3 domain-containing transcription factor RAV1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZWM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.