Factsheet for TraesCS3D01G052400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G231000.1	Wheat	mitochondrion, nucleus	58.36	94.5
TraesCS3B01G065000.1	Wheat	mitochondrion, nucleus	58.36	94.5
TraesCSU01G227200.1	Wheat	nucleus	92.35	92.88
TraesCS3D01G052300.1	Wheat	nucleus	88.1	87.36
HORVU3Hr1G010240.1	Barley	nucleus	86.12	87.36
HORVU3Hr1G010200.1	Barley	mitochondrion	54.11	87.21
HORVU3Hr1G010190.5	Barley	nucleus	90.37	83.07
TraesCS4D01G322600.1	Wheat	nucleus	75.64	73.76
Os01t0141000-01	Rice	nucleus, plastid	74.22	71.78
Zm00001d039907_P001	Maize	nucleus	72.24	67.46
EES02511	Sorghum	nucleus	73.65	67.01
TraesCS4D01G322500.1	Wheat	nucleus	54.39	62.95
TraesCS3D01G260100.1	Wheat	nucleus	50.42	47.59
TraesCS1D01G378900.1	Wheat	nucleus	50.71	45.66
TraesCS1D01G378400.1	Wheat	nucleus	49.29	42.23
TraesCS1D01G378500.1	Wheat	nucleus	49.29	41.53
TraesCS1D01G378800.1	Wheat	nucleus	48.73	41.45
TraesCS7D01G448900.1	Wheat	nucleus	22.1	39.8
TraesCS7D01G017000.1	Wheat	nucleus	22.95	37.33
TraesCS5D01G134700.1	Wheat	nucleus	23.23	30.83
TraesCS2D01G460900.1	Wheat	nucleus	23.23	30.71
TraesCS4D01G114900.1	Wheat	nucleus	22.95	28.72
TraesCS1D01G203900.1	Wheat	nucleus	23.23	28.18
TraesCS2D01G392400.1	Wheat	nucleus	26.91	23.23
TraesCS6D01G240600.1	Wheat	nucleus	27.2	23.19

Protein Annotations

MapMan:15.5.5.3	MapMan:15.5.7.5	Gene3D:2.40.330.10	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:B3_DNA-bd	InterPro:DNA-bd_dom_sf	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR003340	InterPro:IPR015300	InterPro:IPR036955
PFAM:PF00847	PFAM:PF02362	PRINTS:PR00367	PFscan:PS50863	PFscan:PS51032	PANTHER:PTHR31140
PANTHER:PTHR31140:SF9	SMART:SM00380	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS3D01G052400
EnsemblPlants:TraesCS3D01G052400.1	TIGR:cd00018	TIGR:cd10017	SEG:seg	:	:

Description

No Description!

Coordinates

chr3D:+:21888438..21889499

Molecular Weight (calculated)

38519.6 Da

IEP (calculated)

10.183

GRAVY (calculated)

-0.379

Length

353 amino acids

Sequence
(BLAST)

001: MGVEILSSTV EHYSQYSSSA STATTESGAA GRSPMALSLP VAIADESVTS RSTSAQLALS RFKGVVPQPN GRWGSQIYER HARVWLGTFA DQDLAARAYD
101: VAALRYRGRD AATNFPCAAA EPELAFLAAH SKAEIVDMLR KHTYADELRQ GLRRGRGMGT RAQPTPSWAR EPLFEKAVTP SDVGKLNRLV VPKQHAEKHF
201: PLKRTPETTT TTGNGVLLNF EDGEGKVWRF RYSYWNSSQS YVLTKGWSRF VREKGLAAGD SIVFSCSAYG QEKQFFINCK KNTTVNGGKS ASPLPVVETA
301: KGEQVRVVRL FGVDIAGVKR GRAATAEHGP PELFKRQCVA HGQHSPALGA FVL

Best Arabidopsis Sequence Match ( AT3G25730.1 )
(BLAST)

001: MDAMSSVDES STTTDSIPAR KSSSPASLLY RMGSGTSVVL DSENGVEVEV EAESRKLPSS RFKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEDEAARAYD
101: VAAHRFRGRD AVTNFKDTTF EEEVEFLNAH SKSEIVDMLR KHTYKEELDQ RKRNRDGNGK ETTAFALASM VVMTGFKTAE LLFEKTVTPS DVGKLNRLVI
201: PKHQAEKHFP LPLGNNNVSV KGMLLNFEDV NGKVWRFRYS YWNSSQSYVL TKGWSRFVKE KRLCAGDLIS FKRSNDQDQK FFIGWKSKSG LDLETGRVMR
301: LFGVDISLNA VVVVKETTEV LMSSLRCKKQ RVL

Arabidopsis Description

ARF14AP2/ERF and B3 domain-containing transcription factor ARF14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LS06]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.