CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039907_P001	Maize	nucleus	84.54	86.77
TraesCSU01G231000.1	Wheat	mitochondrion, nucleus	43.04	76.61
TraesCS3B01G065000.1	Wheat	mitochondrion, nucleus	43.04	76.61
Os01t0141000-01	Rice	nucleus, plastid	71.13	75.62
TraesCSU01G227200.1	Wheat	nucleus	66.75	73.79
TraesCS3D01G052400.1	Wheat	nucleus	67.01	73.65
TraesCS3A01G054000.1	Wheat	nucleus	67.53	73.6
TraesCS3D01G052300.1	Wheat	nucleus	67.27	73.31
TraesCS3B01G064900.1	Wheat	nucleus	67.27	73.31
TraesCS3B01G065100.1	Wheat	nucleus	64.95	72.0
HORVU3Hr1G010240.1	Barley	nucleus	62.89	70.11
HORVU3Hr1G010200.1	Barley	mitochondrion	39.18	69.41
TraesCS4B01G325700.1	Wheat	plastid	58.76	67.86
HORVU4Hr1G082030.2	Barley	nucleus	43.04	65.75
HORVU3Hr1G010190.5	Barley	nucleus	64.69	65.36
TraesCS4D01G322600.1	Wheat	nucleus	58.76	62.98
TraesCS5A01G497900.1	Wheat	nucleus	59.54	62.77
OQU77426	Sorghum	nucleus	21.65	52.17
KXG22484	Sorghum	nucleus, plastid	47.16	44.85
EES03472	Sorghum	nucleus, plastid	46.91	44.07
HORVU3Hr1G010140.3	Barley	nucleus	37.63	37.63
KXG19112	Sorghum	nucleus	19.33	36.59
KXG19111	Sorghum	nucleus	20.1	32.77
EER92015	Sorghum	nucleus	21.65	30.66
EES13386	Sorghum	nucleus	19.85	30.43
KXG27771	Sorghum	nucleus	20.88	29.56
EES14747	Sorghum	plastid	19.33	26.88
OQU93364	Sorghum	nucleus	22.68	26.67
KXG22988	Sorghum	plastid	20.88	25.31
EES12712	Sorghum	nucleus	24.74	22.86
KXG24821	Sorghum	nucleus	16.75	22.81
EES07445	Sorghum	nucleus	24.74	22.12

Protein Annotations

MapMan:15.5.5.3	MapMan:15.5.7.5	Gene3D:2.40.330.10	Gene3D:3.30.730.10	EntrezGene:8073331	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	InterPro:B3_DNA-bd	UniProt:C5XQN8	InterPro:DNA-bd_dom_sf	InterPro:DNA-bd_pseudobarrel_sf	EnsemblPlants:EES02511
ProteinID:EES02511	ProteinID:EES02511.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR003340	InterPro:IPR015300	InterPro:IPR036955	PFAM:PF00847	PFAM:PF02362
PFscan:PS50863	PFscan:PS51032	PANTHER:PTHR31140	PANTHER:PTHR31140:SF9	SMART:SM00380	SMART:SM01019
EnsemblPlantsGene:SORBI_3003G078100	SUPFAM:SSF101936	SUPFAM:SSF54171	unigene:Sbi.3941	UniParc:UPI0001A84B4D	RefSeq:XP_002457391.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:6677914..6679941

Molecular Weight (calculated)

41362.8 Da

IEP (calculated)

10.348

GRAVY (calculated)

-0.370

Length

388 amino acids

Sequence
(BLAST)

001: MGIESMSPTA APAEDSSSSS SRFSAASTAT TESGAAQPRA ASAAPGGGAV VVGRDASLAD EQAVTSQPLA ASTAAAVAQG SSRFKGVVPQ PNGRWGAQIY
101: ERHARVWLGT FADEEAAARA YDVAALRYRG REAATNFPGA GASAPELTFL AAHSKAEIVD MLRKHTYADE LRQGLRRGRG MGARAQPTPA WARSLLFEKA
201: VTPSDVGKLN RLVVPKQHAE KHFPLKRAPE ASAAAATTGK GVLLNFEDGE GKVWRFRYSY WNSSQSYVLT KGWSRFVREK GLRAGDTIVF SHSTYSSEKQ
301: LFIDCKKTKT TTVATTDGAP VPAPAEKKPS EARVVRLFGV DIAGDGCQKR ARPVEIAFEH GPQQELLKKK QCVGVAHHRS PALGAFLL

Best Arabidopsis Sequence Match ( AT1G68840.2 )
(BLAST)

001: MDSSCIDEIS SSTSESFSAT TAKKLSPPPA AALRLYRMGS GGSSVVLDPE NGLETESRKL PSSKYKGVVP QPNGRWGAQI YEKHQRVWLG TFNEQEEAAR
101: SYDIAACRFR GRDAVVNFKN VLEDGDLAFL EAHSKAEIVD MLRKHTYADE LEQNNKRQLF LSVDANGKRN GSSTTQNDKV LKTREVLFEK AVTPSDVGKL
201: NRLVIPKQHA EKHFPLPSPS PAVTKGVLIN FEDVNGKVWR FRYSYWNSSQ SYVLTKGWSR FVKEKNLRAG DVVTFERSTG LERQLYIDWK VRSGPRENPV
301: QVVVRLFGVD IFNVTTVKPN DVVAVCGGKR SRDVDDMFAL RCSKKQAIIN AL

Arabidopsis Description

RAV2TEM2 [Source:UniProtKB/TrEMBL;Acc:A0A178WNP0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.