Factsheet for HORVU3Hr1G010240.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G065100.1	Wheat	nucleus	89.08	88.57
TraesCSU01G231000.1	Wheat	mitochondrion, nucleus	54.89	87.61
TraesCS3B01G065000.1	Wheat	mitochondrion, nucleus	54.89	87.61
TraesCS3D01G052400.1	Wheat	nucleus	87.36	86.12
TraesCSU01G227200.1	Wheat	nucleus	85.63	84.9
HORVU3Hr1G010200.1	Barley	mitochondrion	52.87	84.02
HORVU3Hr1G010190.5	Barley	nucleus	84.48	76.56
HORVU4Hr1G082030.2	Barley	nucleus	51.72	70.87
Os01t0141000-01	Rice	nucleus, plastid	70.4	67.12
Zm00001d039907_P001	Maize	nucleus	69.25	63.76
EES02511	Sorghum	nucleus	70.11	62.89
HORVU3Hr1G010100.2	Barley	nucleus	54.89	59.69
HORVU3Hr1G010060.1	Barley	nucleus	54.89	54.26
HORVU4Hr1G082090.2	Barley	mitochondrion	52.3	52.91
HORVU4Hr1G074300.4	Barley	nucleus	21.26	49.33
HORVU3Hr1G064590.1	Barley	nucleus	26.44	47.42
HORVU3Hr1G064640.4	Barley	nucleus	48.85	44.74
HORVU1Hr1G082670.6	Barley	nucleus	48.28	42.75
HORVU3Hr1G010140.3	Barley	nucleus	47.13	42.27
HORVU0Hr1G022200.1	Barley	nucleus	22.41	39.0
HORVU7Hr1G002230.1	Barley	nucleus	22.13	35.0
HORVU1Hr1G051780.2	Barley	nucleus	23.56	27.99
HORVU3Hr1G010260.2	Barley	mitochondrion	15.52	27.27
HORVU5Hr1G040620.4	Barley	nucleus	21.26	27.01
HORVU4Hr1G021650.22	Barley	nucleus	21.26	26.52
HORVU7Hr1G046950.1	Barley	nucleus	20.11	25.55
HORVU4Hr1G084950.3	Barley	nucleus	23.28	23.75
HORVU6Hr1G066190.2	Barley	nucleus	27.01	22.98

Protein Annotations

MapMan:15.5.5.3	MapMan:15.5.7.5	Gene3D:2.40.330.10	Gene3D:3.30.730.10	EMBL:AK362038	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	InterPro:B3_DNA-bd	InterPro:DNA-bd_dom_sf	InterPro:DNA-bd_pseudobarrel_sf	UniProt:F2DDS1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:HORVU3Hr1G010240	EnsemblPlants:HORVU3Hr1G010240.1	InterPro:IPR001471
InterPro:IPR003340	InterPro:IPR015300	InterPro:IPR036955	PFAM:PF00847	PFAM:PF02362	PFscan:PS50863
PFscan:PS51032	PANTHER:PTHR31140	PANTHER:PTHR31140:SF9	SMART:SM00380	SMART:SM01019	SUPFAM:SSF101936
SUPFAM:SSF54171	UniParc:UPI000200603A	SEG:seg	:	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DDS1]

Coordinates

chrchr3H:+:22401968..22405112

Molecular Weight (calculated)

38251.5 Da

IEP (calculated)

10.145

GRAVY (calculated)

-0.371

Length

348 amino acids

Sequence
(BLAST)

001: MGVEILSSMV EHSFQYSSGA SSATAESGAV GTPPRHLSLP VAIADESLTS RSASSRFKGV VPQPNGRWGA QIYERHARVW LGTFPDQDSA ARAYDVASLR
101: YRGGDAAFNF PCVVVEAELA FLAAHSKAEI VDMLRKQTYA DELRQGLRRG RGMGVRAQPM PSWARVPLFE KAVTPSDVGK LNRLVVPKQH AEKHFPLKRS
201: PETTTTTGNG VLLNFEDGQG KVWRFRYSYW NSSQSYVLTK GWSRFVREKG LGAGDSIMFS CSAYGQEKQF FIDCKKNTTV NGGKSASPLQ VMEIAKAEQV
301: RVVRLFGVDI AGVKRERAAT AEQGPQGWFK RQCMAHGQHS PALGDFAL

Best Arabidopsis Sequence Match ( AT1G13260.1 )
(BLAST)

001: MESSSVDEST TSTGSICETP AITPAKKSSV GNLYRMGSGS SVVLDSENGV EAESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEDEAARAYD
101: VAVHRFRRRD AVTNFKDVKM DEDEVDFLNS HSKSEIVDML RKHTYNEELE QSKRRRNGNG NMTRTLLTSG LSNDGVSTTG FRSAEALFEK AVTPSDVGKL
201: NRLVIPKHHA EKHFPLPSSN VSVKGVLLNF EDVNGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKNLRAGD VVSFSRSNGQ DQQLYIGWKS RSGSDLDAGR
301: VLRLFGVNIS PESSRNDVVG NKRVNDTEML SLVCSKKQRI FHAS

Arabidopsis Description

RAV1AP2/ERF and B3 domain-containing transcription factor RAV1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZWM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.