Factsheet for TraesCS4B01G325700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G322600.1	Wheat	nucleus	94.05	87.29
TraesCS5A01G497900.1	Wheat	nucleus	94.94	86.68
HORVU4Hr1G082030.2	Barley	nucleus	60.12	79.53
TraesCS3B01G064900.1	Wheat	nucleus	80.36	75.84
TraesCS3B01G065100.1	Wheat	nucleus	76.49	73.43
TraesCS3B01G065000.1	Wheat	mitochondrion, nucleus	46.13	71.1
Os01t0141000-01	Rice	nucleus, plastid	68.45	63.01
Zm00001d039907_P001	Maize	nucleus	67.26	59.79
TraesCS4B01G325600.1	Wheat	nucleus	54.17	59.09
EES02511	Sorghum	nucleus	67.86	58.76
TraesCS3B01G293000.1	Wheat	nucleus	51.19	44.91
TraesCS1B01G392300.1	Wheat	nucleus	50.6	43.48
TraesCS1B01G392000.1	Wheat	nucleus	51.19	41.85
TraesCS1B01G392200.1	Wheat	nucleus, plastid	49.4	39.9
TraesCS7B01G362500.1	Wheat	nucleus	22.02	37.76
TraesCS5B01G126200.1	Wheat	nucleus	24.4	30.94
TraesCS2B01G482400.1	Wheat	nucleus	24.4	30.71
TraesCS1B01G215000.1	Wheat	nucleus	24.4	29.82
TraesCS4B01G117100.1	Wheat	nucleus	23.81	28.67
TraesCS4B01G348500.1	Wheat	nucleus	24.7	26.02
TraesCS2B01G412700.1	Wheat	nucleus	28.57	23.47
TraesCS6B01G286900.1	Wheat	nucleus	27.38	22.49

Protein Annotations

MapMan:15.5.5.3	MapMan:15.5.7.5	Gene3D:2.40.330.10	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:B3_DNA-bd	InterPro:DNA-bd_dom_sf	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR003340	InterPro:IPR015300	InterPro:IPR036955
PFAM:PF00847	PFAM:PF02362	PRINTS:PR00367	PFscan:PS50863	PFscan:PS51032	PANTHER:PTHR31140
PANTHER:PTHR31140:SF9	SMART:SM00380	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS4B01G325700
EnsemblPlants:TraesCS4B01G325700.1	TIGR:cd00018	TIGR:cd10017	SEG:seg	:	:

Description

No Description!

Coordinates

chr4B:+:616967513..616968523

Molecular Weight (calculated)

36739.4 Da

IEP (calculated)

10.051

GRAVY (calculated)

-0.390

Length

336 amino acids

Sequence
(BLAST)

001: MGVQILSSTP EHSSQHSSGA STATTESGAA GRLPTTLGLP VAIPDEAVTS RSASASAQWA SSRFKGVVPQ PNGRWGAQIY DRHARVWIGT FPDEDAAARA
101: YDVAALRYRG LDAATNFPRT ASSTELAFLA AHSKAEIVDM LRKHTYSDEL RRGLHRGRGI VGRAEPTPSW AREPLFEKVL TPSDVGKLNR IVLPKQHAEK
201: HIPLKRTPET TTTADKAVLL NFEDGEGKVW RFRYSYWNSS LSYVLTKGWS RFVREKGLVA GDVVVFSCSE YGQEKHFFID YKKTTTVSGG AAASPPPVVE
301: KGKGEQARVV RLFGVDLAGE MRGLAAPAEL ELFKRQ

Best Arabidopsis Sequence Match ( AT1G13260.1 )
(BLAST)

001: MESSSVDEST TSTGSICETP AITPAKKSSV GNLYRMGSGS SVVLDSENGV EAESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEDEAARAYD
101: VAVHRFRRRD AVTNFKDVKM DEDEVDFLNS HSKSEIVDML RKHTYNEELE QSKRRRNGNG NMTRTLLTSG LSNDGVSTTG FRSAEALFEK AVTPSDVGKL
201: NRLVIPKHHA EKHFPLPSSN VSVKGVLLNF EDVNGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKNLRAGD VVSFSRSNGQ DQQLYIGWKS RSGSDLDAGR
301: VLRLFGVNIS PESSRNDVVG NKRVNDTEML SLVCSKKQRI FHAS

Arabidopsis Description

RAV1AP2/ERF and B3 domain-containing transcription factor RAV1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZWM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.