Factsheet for TraesCS1D01G378500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G372100.1	Wheat	nucleus	92.36	87.56
TraesCS1B01G392000.1	Wheat	nucleus	85.68	87.35
TraesCS1D01G378900.1	Wheat	nucleus	81.15	86.73
TraesCS1D01G378400.1	Wheat	nucleus	85.2	86.65
TraesCS1D01G378800.1	Wheat	nucleus	85.2	86.02
HORVU1Hr1G082670.6	Barley	nucleus	79.95	85.24
KXG22484	Sorghum	nucleus, plastid	68.02	69.85
Zm00001d009468_P001	Maize	nucleus, plastid	62.05	69.33
TraesCS3D01G260100.1	Wheat	nucleus	60.38	67.65
Os05t0549800-01	Rice	nucleus	55.37	67.64
GSMUA_Achr1P21250_001	Banana	nucleus	42.24	60.2
HORVU4Hr1G074300.4	Barley	nucleus	20.53	57.33
CDX97996	Canola	nucleus	43.68	56.31
CDY72302	Canola	nucleus	43.68	56.13
KRH34761	Soybean	nucleus	46.78	55.84
CDY58354	Canola	nucleus	43.44	55.83
CDY61361	Canola	nucleus	43.44	55.66
CDY40973	Canola	nucleus	41.77	55.56
AT1G68840.1	Thale cress	nucleus	46.06	54.83
CDX81561	Canola	nucleus	44.87	54.81
CDY24391	Canola	nucleus	44.15	54.73
KRG92025	Soybean	nucleus	47.02	54.42
Bra019821.1-P	Field mustard	nucleus	43.91	53.96
Bra026917.1-P	Field mustard	nucleus	43.68	53.82
AT1G13260.1	Thale cress	nucleus	44.15	53.78
CDY36099	Canola	nucleus	44.87	53.71
CDY45849	Canola	nucleus, plastid	44.87	53.71
Bra038346.1-P	Field mustard	nucleus, plastid	44.87	53.71
CDX84999	Canola	nucleus	45.35	53.67
TraesCS4D01G322500.1	Wheat	nucleus	38.66	53.11
AT3G25730.1	Thale cress	nucleus	42.0	52.85
CDY16133	Canola	nucleus	45.11	52.79
Bra026509.1-P	Field mustard	nucleus	41.05	52.76
GSMUA_Achr6P01420_001	Banana	nucleus	39.62	52.53
Bra011002.1-P	Field mustard	nucleus	44.87	52.37
AT1G25560.1	Thale cress	nucleus	45.11	52.35
CDX99755	Canola	nucleus	42.48	52.35
VIT_01s0011g03070.t01	Wine grape	nucleus	46.54	51.59
Bra024735.1-P	Field mustard	nucleus	44.87	50.54
KRH75484	Soybean	nucleus	46.3	50.52
TraesCS3D01G052300.1	Wheat	nucleus	42.72	50.28
KRH70603	Soybean	nucleus	47.49	49.63
Solyc05g009790.1.1	Tomato	nucleus	46.78	49.62
CDX83547	Canola	nucleus	38.19	49.38
TraesCS3D01G052400.1	Wheat	nucleus	41.53	49.29
PGSC0003DMT400002125	Potato	nucleus	46.54	48.99
TraesCS4D01G322600.1	Wheat	nucleus	40.57	46.96
TraesCS7D01G448900.1	Wheat	nucleus	19.57	41.84
TraesCS7D01G017000.1	Wheat	nucleus	20.29	39.17
TraesCS5D01G134700.1	Wheat	nucleus	22.67	35.71
TraesCS2D01G460900.1	Wheat	nucleus	22.2	34.83
TraesCS4D01G114900.1	Wheat	nucleus	22.67	33.69
TraesCS1D01G203900.1	Wheat	nucleus	22.91	32.99
TraesCS2D01G392400.1	Wheat	nucleus	26.49	27.14
TraesCS6D01G240600.1	Wheat	nucleus	26.73	27.05

Protein Annotations

MapMan:15.5.5.3	MapMan:15.5.7.5	Gene3D:2.40.330.10	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:B3_DNA-bd	InterPro:DNA-bd_dom_sf	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR003340	InterPro:IPR015300	InterPro:IPR036955
PFAM:PF00847	PFAM:PF02362	PFscan:PS50863	PFscan:PS51032	PANTHER:PTHR31140	PANTHER:PTHR31140:SF21
SMART:SM00380	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS1D01G378500	EnsemblPlants:TraesCS1D01G378500.1
TIGR:cd00018	TIGR:cd10017	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1D:-:454492550..454493809

Molecular Weight (calculated)

45167.1 Da

IEP (calculated)

10.173

GRAVY (calculated)

-0.386

Length

419 amino acids

Sequence
(BLAST)

001: MESARSCLMD DVSSGASTGN KASGVPAAPA TKPLRRVGSG ASAVMDAPEP GAEADSGRGG RLPSSKYKGV VPQPNGRWGA QIYERHQRVW LGTFTGEAEA
101: ARAYDAAAQR FRGRDAVTNF RPLVESDADD AAELRFLAAR SKAEVVDMLR KHIYPDELAQ HKRAFFASAA AAASSPTSSS SPPYSWAPST AAGRREHLFD
201: KTVTPSDVGK LNRLVIPKQH AEKHFPLQLP SAGTAVSGEC KGVLLNFDDA AGKVWRFRYS YWNSSQSYVL TKGWSRFVKE KGLHAGDAVG FYRSVSGNNQ
301: LFIDCKLRSM TTTTTFVNAT AATTSPAPVM RTVRLFGVDL LTAPAPRHAP EHEDYGLAKT NKRSVSVDAS VAAAIPAHAV WKKRCVDFSL TYRLTTTPQC
401: PRSGRRDELV QAAGSTFAL

Best Arabidopsis Sequence Match ( AT1G13260.1 )
(BLAST)

001: MESSSVDEST TSTGSICETP AITPAKKSSV GNLYRMGSGS SVVLDSENGV EAESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEDEAARAYD
101: VAVHRFRRRD AVTNFKDVKM DEDEVDFLNS HSKSEIVDML RKHTYNEELE QSKRRRNGNG NMTRTLLTSG LSNDGVSTTG FRSAEALFEK AVTPSDVGKL
201: NRLVIPKHHA EKHFPLPSSN VSVKGVLLNF EDVNGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKNLRAGD VVSFSRSNGQ DQQLYIGWKS RSGSDLDAGR
301: VLRLFGVNIS PESSRNDVVG NKRVNDTEML SLVCSKKQRI FHAS

Arabidopsis Description

RAV1AP2/ERF and B3 domain-containing transcription factor RAV1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZWM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.