Factsheet for Zm00001d043782_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES03472	Sorghum	nucleus, plastid	93.06	87.65
Zm00001d011639_P001	Maize	nucleus	85.86	82.47
TraesCS3D01G260100.1	Wheat	nucleus	77.89	81.02
TraesCS3B01G293000.1	Wheat	nucleus	79.18	80.42
TraesCS3A01G259900.1	Wheat	nucleus	76.61	79.47
Os01t0693400-01	Rice	nucleus	79.43	78.63
HORVU3Hr1G064640.4	Barley	nucleus	76.09	77.89
HORVU3Hr1G064590.1	Barley	nucleus	36.76	73.71
Zm00001d009468_P001	Maize	nucleus, plastid	68.89	71.47
Zm00001d038907_P001	Maize	nucleus, plastid	71.98	68.97
Zm00001d035982_P001	Maize	nucleus	14.4	63.64
GSMUA_Achr1P21250_001	Banana	nucleus	45.76	60.54
CDX97996	Canola	nucleus	49.1	58.77
CDY61361	Canola	nucleus	49.1	58.41
CDY58354	Canola	nucleus	48.59	57.98
CDY72302	Canola	nucleus	48.59	57.98
CDY24391	Canola	nucleus	49.1	56.51
CDY40973	Canola	nucleus	45.76	56.51
CDX84999	Canola	nucleus	51.41	56.5
KRH34761	Soybean	nucleus	50.9	56.41
CDY36099	Canola	nucleus	50.64	56.29
Bra026917.1-P	Field mustard	nucleus	49.1	56.18
CDY16133	Canola	nucleus	51.67	56.15
Bra019821.1-P	Field mustard	nucleus	49.1	56.01
AT3G25730.1	Thale cress	nucleus	47.3	55.26
AT1G13260.1	Thale cress	nucleus	48.84	55.23
AT1G68840.1	Thale cress	nucleus	49.87	55.11
KRG92025	Soybean	nucleus	51.16	54.97
Bra011002.1-P	Field mustard	nucleus	50.64	54.87
CDX81561	Canola	nucleus	48.33	54.81
AT1G25560.1	Thale cress	nucleus	50.64	54.57
Bra024735.1-P	Field mustard	nucleus	51.67	54.03
CDY45849	Canola	nucleus, plastid	48.59	54.0
Bra038346.1-P	Field mustard	nucleus, plastid	48.59	54.0
Bra026509.1-P	Field mustard	nucleus	45.24	53.99
VIT_01s0011g03070.t01	Wine grape	nucleus	51.93	53.44
CDX99755	Canola	nucleus	46.02	52.65
KRH75484	Soybean	nucleus	51.41	52.08
GSMUA_Achr6P01420_001	Banana	nucleus	42.16	51.9
CDX83547	Canola	nucleus	42.67	51.23
Solyc05g009790.1.1	Tomato	nucleus	51.67	50.89
KRH70603	Soybean	nucleus	52.19	50.62
PGSC0003DMT400002125	Potato	nucleus	51.67	50.5
Zm00001d039907_P001	Maize	nucleus	46.53	47.88
Zm00001d048815_P001	Maize	nucleus	23.39	39.22
Zm00001d035903_P001	Maize	nucleus	21.34	37.05
Zm00001d010077_P001	Maize	nucleus	24.16	36.29
Zm00001d024103_P001	Maize	nucleus	20.82	36.16
Zm00001d023446_P001	Maize	nucleus	25.19	34.63
Zm00001d029749_P001	Maize	nucleus	23.39	33.33
Zm00001d047359_P001	Maize	nucleus	23.39	32.85
Zm00001d024545_P001	Maize	nucleus	20.57	32.13
Zm00001d027409_P001	Maize	nucleus	25.71	30.58
Zm00001d052591_P001	Maize	nucleus	23.14	29.32
Zm00001d024354_P001	Maize	nucleus, plastid	21.08	28.77
Zm00001d002562_P001	Maize	nucleus	29.31	27.87
Zm00001d026005_P001	Maize	nucleus	28.28	27.23
Zm00001d017618_P001	Maize	nucleus	29.31	27.01
Zm00001d051471_P001	Maize	nucleus	27.76	25.71

Protein Annotations

MapMan:15.5.5.3	MapMan:15.5.7.5	Gene3D:2.40.330.10	Gene3D:3.30.730.10	UniProt:A0A1D6NEV8	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	InterPro:B3_DNA-bd	InterPro:DNA-bd_dom_sf	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR003340	InterPro:IPR015300	InterPro:IPR036955
ProteinID:ONM39018.1	PFAM:PF00847	PFAM:PF02362	PFscan:PS50863	PFscan:PS51032	PANTHER:PTHR31140
PANTHER:PTHR31140:SF21	SMART:SM00380	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54171	UniParc:UPI0000598680
EnsemblPlantsGene:Zm00001d043782	EnsemblPlants:Zm00001d043782_P001	EnsemblPlants:Zm00001d043782_T001	SEG:seg	:	:

Description

AP2-EREBP-transcription factor 126DNA-binding protein RAV1

Coordinates

chr3:+:210069089..210070258

Molecular Weight (calculated)

40495.6 Da

IEP (calculated)

9.923

GRAVY (calculated)

-0.169

Length

389 amino acids

Sequence
(BLAST)

001: MDSASSLVDD TSSGGGGGAS TDKLRALAVF AAASGTPLER MGSGASAVVD AAEPGAEADS GSGAAAVSVG GKLPSSRYKG VVPQPNGRWG AQIYERHQRV
101: WLGTFAGEAD AARAYDVAAQ RFRGRDAVTN FRPLADADPD AAAELRFLAS RSKAEVVDML RKHTYFDELA QNKRAFAAAS ASAATASSLA NNPSSYASLS
201: PATATAAARE HLFDKTVTPS DVGKLNRLVI PKQHAEKHFP LQLPSAGGES KGVLLNLEDA AGKVWRFRYS YWNSSQSYVL TKGWSRFVKE KGLQAGDVVG
301: FYRSAAGADT KLFIDCKLRP NSVVVASTAG PSPPAPVAKA VRLFGVDLLT APATAAAPAE AVAGCKRARD LGSPPQAAFK KQLVELALV

Best Arabidopsis Sequence Match ( AT1G68840.2 )
(BLAST)

001: MDSSCIDEIS SSTSESFSAT TAKKLSPPPA AALRLYRMGS GGSSVVLDPE NGLETESRKL PSSKYKGVVP QPNGRWGAQI YEKHQRVWLG TFNEQEEAAR
101: SYDIAACRFR GRDAVVNFKN VLEDGDLAFL EAHSKAEIVD MLRKHTYADE LEQNNKRQLF LSVDANGKRN GSSTTQNDKV LKTREVLFEK AVTPSDVGKL
201: NRLVIPKQHA EKHFPLPSPS PAVTKGVLIN FEDVNGKVWR FRYSYWNSSQ SYVLTKGWSR FVKEKNLRAG DVVTFERSTG LERQLYIDWK VRSGPRENPV
301: QVVVRLFGVD IFNVTTVKPN DVVAVCGGKR SRDVDDMFAL RCSKKQAIIN AL

Arabidopsis Description

RAV2TEM2 [Source:UniProtKB/TrEMBL;Acc:A0A178WNP0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.