Factsheet for Bra041023.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY62470	Canola	nucleus	75.38	87.28
Bra001411.1-P	Field mustard	nucleus	76.14	85.17
Bra034828.1-P	Field mustard	nucleus	79.55	81.4
AT3G11580.3	Thale cress	cytosol, endoplasmic reticulum, nucleus	80.3	57.14
Bra005886.1-P	Field mustard	nucleus	56.06	55.43
Bra017262.1-P	Field mustard	nucleus	48.11	51.84
Bra005301.1-P	Field mustard	nucleus	48.48	51.61
Bra009171.1-P	Field mustard	nucleus	46.21	51.05
GSMUA_Achr9P02600_001	Banana	nucleus	33.71	46.11
GSMUA_Achr3P19210_001	Banana	nucleus	33.71	44.28
GSMUA_Achr6P35600_001	Banana	nucleus	39.02	42.56
TraesCS5D01G134700.1	Wheat	nucleus	42.42	42.11
TraesCS5B01G126200.1	Wheat	nucleus	42.05	41.89
TraesCS4A01G198300.2	Wheat	nucleus	43.94	41.58
TraesCS5A01G127100.1	Wheat	nucleus	41.67	41.35
TraesCS4B01G117100.1	Wheat	nucleus	43.18	40.86
GSMUA_Achr6P13140_001	Banana	nucleus	37.88	40.49
VIT_08s0007g02810.t01	Wine grape	nucleus	43.56	40.35
TraesCS2B01G482400.1	Wheat	nucleus	40.53	40.07
TraesCS4D01G114900.1	Wheat	nucleus	42.8	40.07
TraesCS2A01G460700.1	Wheat	nucleus	40.15	39.85
GSMUA_Achr9P08980_001	Banana	nucleus	24.24	39.51
TraesCS2D01G460900.1	Wheat	nucleus	39.77	39.33
HORVU4Hr1G021650.22	Barley	nucleus	41.29	39.07
KXG27771	Sorghum	nucleus	40.53	39.05
KRH67965	Soybean	nucleus	42.42	38.89
GSMUA_Achr11P...	Banana	nucleus	26.52	37.84
Zm00001d023446_P001	Maize	nucleus	40.53	37.81
Os11t0156000-01	Rice	nucleus	39.02	36.92
KRG96220	Soybean	nucleus	41.29	36.45
KRH32791	Soybean	nucleus	45.83	35.91
HORVU5Hr1G040620.4	Barley	nucleus	36.74	35.4
Zm00001d052591_P001	Maize	nucleus	40.91	35.18
KRH72242	Soybean	nucleus	45.45	34.88
Solyc09g010230.1.1	Tomato	nucleus	45.45	34.78
KXG22988	Sorghum	plastid	41.67	34.38
PGSC0003DMT400023077	Potato	nucleus	42.8	33.73
Bra040478.1-P	Field mustard	nucleus	34.85	31.4
Bra004501.1-P	Field mustard	nucleus	34.47	30.64
Bra000434.1-P	Field mustard	nucleus	34.85	29.68
Bra007646.1-P	Field mustard	nucleus	32.2	29.11
Bra003482.1-P	Field mustard	nucleus	31.44	29.02
Os12t0157000-01	Rice	cytosol, nucleus	22.35	28.1
Bra014415.1-P	Field mustard	nucleus	31.82	26.25
Bra019821.1-P	Field mustard	nucleus	32.2	24.93
Bra038346.1-P	Field mustard	nucleus, plastid	32.58	24.57
Bra026917.1-P	Field mustard	nucleus	31.44	24.41
Bra030497.1-P	Field mustard	nucleus	32.58	24.29
Bra011002.1-P	Field mustard	nucleus	32.58	23.96
Bra033294.1-P	Field mustard	nucleus	31.06	23.84
Bra026509.1-P	Field mustard	nucleus	29.17	23.62
GSMUA_Achr6P18320_001	Banana	nucleus	29.92	23.24
Bra024735.1-P	Field mustard	nucleus	32.58	23.12
Bra008552.1-P	Field mustard	nucleus	29.55	23.08
Bra037417.1-P	Field mustard	nucleus	26.89	22.9
Bra030458.1-P	Field mustard	nucleus	21.97	18.35
Bra030476.1-P	Field mustard	nucleus	21.59	17.54
Bra018868.1-P	Field mustard	nucleus	21.59	16.86
Bra014282.1-P	Field mustard	nucleus	21.59	16.81
Bra018894.1-P	Field mustard	nucleus	20.83	16.27
Bra018869.1-P	Field mustard	nucleus	20.45	16.17
Bra018854.1-P	Field mustard	nucleus	20.08	15.59

Protein Annotations

MapMan:15.5.5.3	Gene3D:2.40.330.10	InterPro:B3_DNA-bd	EnsemblPlantsGene:Bra041023	EnsemblPlants:Bra041023.1	EnsemblPlants:Bra041023.1-P
InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300
UniProt:M4FIU4	PFAM:PF02362	PFscan:PS50863	PANTHER:PTHR31140	PANTHER:PTHR31140:SF2	SMART:SM01019
SUPFAM:SSF101936	UniParc:UPI000253EBC6	:	:	:	:

Description

AT3G11580 (E=1e-122) | DNA-binding protein, putative

Coordinates

chrScaffold000386:+:2341..4081

Molecular Weight (calculated)

30059.9 Da

IEP (calculated)

7.541

GRAVY (calculated)

-0.649

Length

264 amino acids

Sequence
(BLAST)

001: MSGNHYSRDI HHNTPSVHHH QNYAVVDREY LFEKSLTPSD VGKLNRLVIP KQHAEKHFPL NNAGDDVAAA ETTEKGMLLT FEDESGKCWK FRYSYWNSSQ
101: SYVLTKGWSR YVKDKHLHAG DVVFFQRHRF DLHRVFIGWR KRGEVSSPTA VSVVSQEARV NTTAYWSGLT TPYRQVHAST SSYPNIHQEY SHYGAVAEIP
201: TVVTGSSRTV RLFGVNLECH GDVVETPPCP DGYNGQHFYY YSTPDPMNIS FAGEAMEQVG DGRR

Best Arabidopsis Sequence Match ( AT3G11580.1 )
(BLAST)

001: MSVNHYHNTL SLHHHHQNDV AIAQRESLFE KSLTPSDVGK LNRLVIPKQH AEKYFPLNNN NNNGGSGDDV ATTEKGMLLS FEDESGKCWK FRYSYWNSSQ
101: SYVLTKGWSR YVKDKHLDAG DVVFFQRHRF DLHRLFIGWR RRGEASSSPA VSVVSQEALV NTTAYWSGLT TPYRQVHAST TYPNIHQEYS HYGAVVDHAQ
201: SIPPVVAGSS RTVRLFGVNL ECHGDAVEPP PRPDVYNDQH IYYYSTPHPM NISFAGEALE QVGDGRG

Arabidopsis Description

AP2/B3-like transcriptional factor family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LT60]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.