Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G127100.1 | Wheat | nucleus | 92.48 | 92.48 |
| TraesCS5D01G134700.1 | Wheat | nucleus | 92.48 | 92.48 |
| TraesCS5B01G126200.1 | Wheat | nucleus | 92.11 | 92.45 |
| TraesCS4A01G198300.2 | Wheat | nucleus | 77.44 | 73.84 |
| HORVU5Hr1G040620.4 | Barley | nucleus | 73.68 | 71.53 |
| GSMUA_Achr3P19210_001 | Banana | nucleus | 45.11 | 59.7 |
| GSMUA_Achr9P02600_001 | Banana | nucleus | 42.86 | 59.07 |
| GSMUA_Achr6P13140_001 | Banana | nucleus | 51.13 | 55.06 |
| GSMUA_Achr6P35600_001 | Banana | nucleus | 48.5 | 53.31 |
| GSMUA_Achr9P08980_001 | Banana | nucleus | 29.32 | 48.15 |
| Bra017262.1-P | Field mustard | nucleus | 41.35 | 44.9 |
| CDX84162 | Canola | nucleus | 40.98 | 44.86 |
| CDY43751 | Canola | nucleus | 40.98 | 44.86 |
| AT2G36080.1 | Thale cress | nucleus | 40.6 | 44.26 |
| Bra001411.1-P | Field mustard | nucleus | 39.1 | 44.07 |
| CDX73868 | Canola | nucleus | 39.1 | 44.07 |
| Bra005301.1-P | Field mustard | nucleus | 40.98 | 43.95 |
| CDX75073 | Canola | nucleus | 40.98 | 43.95 |
| GSMUA_Achr11P... | Banana | nucleus | 29.7 | 42.7 |
| CDY62470 | Canola | nucleus | 36.47 | 42.54 |
| CDY01036 | Canola | nucleus | 40.98 | 42.41 |
| CDY08512 | Canola | nucleus | 39.47 | 42.34 |
| Bra034828.1-P | Field mustard | nucleus | 39.85 | 41.09 |
| Bra041023.1-P | Field mustard | nucleus | 39.85 | 40.15 |
| AT5G06250.4 | Thale cress | nucleus | 42.48 | 39.79 |
| CDY47260 | Canola | nucleus | 39.85 | 39.7 |
| Bra005886.1-P | Field mustard | nucleus | 39.85 | 39.7 |
| TraesCS7A01G461000.1 | Wheat | nucleus | 28.95 | 39.49 |
| VIT_08s0007g02810.t01 | Wine grape | nucleus | 40.23 | 37.54 |
| KRG96220 | Soybean | nucleus | 41.73 | 37.12 |
| TraesCS7A01G020800.1 | Wheat | nucleus | 27.44 | 36.87 |
| KRH67965 | Soybean | nucleus | 39.47 | 36.46 |
| KRH32791 | Soybean | nucleus | 45.11 | 35.61 |
| PGSC0003DMT400072354 | Potato | nucleus | 38.35 | 35.42 |
| CDX80996 | Canola | nucleus | 36.09 | 34.91 |
| KRH72242 | Soybean | nucleus | 44.74 | 34.59 |
| TraesCS4A01G472700.1 | Wheat | nucleus | 27.82 | 34.1 |
| TraesCS7A01G020700.1 | Wheat | nucleus | 27.44 | 33.95 |
| Solyc10g083210.1.1 | Tomato | nucleus | 39.1 | 33.77 |
| TraesCS1A01G200500.1 | Wheat | nucleus | 34.59 | 33.09 |
| Bra009171.1-P | Field mustard | nucleus | 28.95 | 32.22 |
| CDX98911 | Canola | nucleus | 28.95 | 32.22 |
| CDY70080 | Canola | nucleus | 28.95 | 32.22 |
| TraesCS5A01G516600.1 | Wheat | nucleus | 38.35 | 32.18 |
| Solyc09g010230.1.1 | Tomato | nucleus | 41.73 | 32.17 |
| PGSC0003DMT400023077 | Potato | nucleus | 40.23 | 31.94 |
| AT3G11580.3 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 42.48 | 30.46 |
| GSMUA_Achr6P18320_001 | Banana | nucleus | 35.34 | 27.65 |
| TraesCS3A01G053900.1 | Wheat | nucleus | 31.2 | 25.94 |
| TraesCS2A01G394700.1 | Wheat | nucleus | 37.97 | 25.0 |
| TraesCS3A01G259900.1 | Wheat | nucleus | 34.96 | 24.8 |
| TraesCS6A01G259600.1 | Wheat | nucleus | 36.84 | 23.67 |
| TraesCS3A01G054000.1 | Wheat | nucleus | 31.58 | 23.6 |
| TraesCS1A01G372300.1 | Wheat | nucleus | 34.59 | 23.47 |
| TraesCS5A01G497900.1 | Wheat | nucleus | 31.2 | 22.55 |
| TraesCS1A01G372200.1 | Wheat | nucleus | 34.59 | 22.28 |
| TraesCS1A01G372100.1 | Wheat | nucleus | 34.59 | 20.81 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G460700.1 | EnsemblPlantsGene:TraesCS2A01G460700 | Gene3D:2.40.330.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf | InterPro:IPR003340 | InterPro:IPR015300 | PANTHER:PTHR31140 |
| PANTHER:PTHR31140:SF19 | PFAM:PF02362 | PFscan:PS50863 | SMART:SM01019 | SUPFAM:SSF101936 | TIGR:cd10017 |
| MapMan:15.5.5.3 | : | : | : | : | : |
Description
No Description!
Coordinates
chr2A:+:706995188..706996214
Molecular Weight (calculated)
29980.0 Da
IEP (calculated)
8.315
GRAVY (calculated)
-0.727
Length
266 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMHHLSQGH PQAWPWGVAM YTNLHYHHQY EREHLFEKTL TPSDVGKLNR LVIPKQHAER YFPLNGGDSP GDKDLLLSFE DEASKPWRFR YSYWTSSQSY
101: VLTKGWSRYV KEKQLDAGDI VHFERVRGLG TGDRLFICCR RRGKSALPPP VRVSPPALNA GEQQPWSPMC YSTSGSYPTS PANSHAYRRS VEQDHSDMLH
201: AGDSPREANA KSSTASGPPS RRLRLFGVNL DCGPEPEAEA ATPMYDYTHQ SPYAAVVTVP AYWASS
101: VLTKGWSRYV KEKQLDAGDI VHFERVRGLG TGDRLFICCR RRGKSALPPP VRVSPPALNA GEQQPWSPMC YSTSGSYPTS PANSHAYRRS VEQDHSDMLH
201: AGDSPREANA KSSTASGPPS RRLRLFGVNL DCGPEPEAEA ATPMYDYTHQ SPYAAVVTVP AYWASS
001: MSVNHYHNTL SLHHHHQNDV AIAQRESLFE KSLTPSDVGK LNRLVIPKQH AEKYFPLNNN NNNGGSGDDV ATTEKGMLLS FEDESGKCWK FRYSYWNSSQ
101: SYVLTKGWSR YVKDKHLDAG DVVFFQRHRF DLHRLFIGWR RRGEASSSPA VSVVSQEALV NTTAYWSGLT TPYRQVHAST TYPNIHQEYS HYGAVVDHAQ
201: SIPPVVAGSS RTVRLFGVNL ECHGDAVEPP PRPDVYNDQH IYYYSTPHPM VNIFFFYIFV RFKFLLTYDI IIKQMSWLFL ETRQMKISNF KIDLKEIFMF
301: NKLYKGGIRE NNTIHLTVKP HGQFGFYLIT LICFVYSFVS VASFCSLINI SRKYIVSCEN SLYFGFTILI C
101: SYVLTKGWSR YVKDKHLDAG DVVFFQRHRF DLHRLFIGWR RRGEASSSPA VSVVSQEALV NTTAYWSGLT TPYRQVHAST TYPNIHQEYS HYGAVVDHAQ
201: SIPPVVAGSS RTVRLFGVNL ECHGDAVEPP PRPDVYNDQH IYYYSTPHPM VNIFFFYIFV RFKFLLTYDI IIKQMSWLFL ETRQMKISNF KIDLKEIFMF
301: NKLYKGGIRE NNTIHLTVKP HGQFGFYLIT LICFVYSFVS VASFCSLINI SRKYIVSCEN SLYFGFTILI C
Arabidopsis Description
AP2/B3-like transcriptional factor family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LT60]
SUBAcon: [endoplasmic reticulum,nucleus,cytosol]
SUBAcon: [endoplasmic reticulum,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.