Factsheet for Bra014282.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46564	Canola	nucleus	98.53	98.53
CDY51249	Canola	nucleus	98.23	98.23
Bra030458.1-P	Field mustard	nucleus	74.34	79.75
AT1G51120.1	Thale cress	nucleus	78.17	75.28
Bra018894.1-P	Field mustard	nucleus	71.98	72.19
AT1G50680.1	Thale cress	nucleus	67.26	67.66
Bra018854.1-P	Field mustard	nucleus	65.49	65.29
Bra018868.1-P	Field mustard	nucleus	64.9	65.09
Bra030476.1-P	Field mustard	nucleus	60.18	62.77
Bra018869.1-P	Field mustard	nucleus	59.0	59.88
KRG93082	Soybean	nucleus	44.25	47.02
PGSC0003DMT400085602	Potato	nucleus	17.4	46.09
VIT_11s0037g00010.t01	Wine grape	nucleus	46.02	43.7
Solyc03g083110.1.1	Tomato	nucleus	42.77	43.28
PGSC0003DMT400092316	Potato	nucleus	12.68	32.33
Solyc12g098460.1.1	Tomato	nucleus	19.47	31.58
GSMUA_Achr11P...	Banana	nucleus	31.27	31.55
GSMUA_Achr8P14650_001	Banana	nucleus	37.76	30.92
Bra026509.1-P	Field mustard	nucleus	29.2	30.37
Bra038346.1-P	Field mustard	nucleus, plastid	30.68	29.71
Bra019821.1-P	Field mustard	nucleus	29.79	29.62
Bra026917.1-P	Field mustard	nucleus	29.2	29.12
Bra011002.1-P	Field mustard	nucleus	30.68	28.97
Bra024735.1-P	Field mustard	nucleus	30.38	27.69
Bra001411.1-P	Field mustard	nucleus	17.7	25.42
Bra005301.1-P	Field mustard	nucleus	17.4	23.79
Bra017262.1-P	Field mustard	nucleus	17.11	23.67
Bra034828.1-P	Field mustard	nucleus	17.7	23.26
Zm00001d024354_P001	Maize	nucleus, plastid	18.88	22.46
Bra005886.1-P	Field mustard	nucleus	17.11	21.72
Bra041023.1-P	Field mustard	nucleus	16.81	21.59
EES14747	Sorghum	plastid	17.4	21.15
PGSC0003DMT400040900	Potato	nucleus	8.85	19.61
Bra004501.1-P	Field mustard	nucleus	17.11	19.53
Os02t0455800-01	Rice	nucleus	15.04	19.1
KXG24821	Sorghum	nucleus	15.93	18.95
Bra003482.1-P	Field mustard	nucleus	15.93	18.88
Bra007646.1-P	Field mustard	nucleus	16.22	18.84
Bra040478.1-P	Field mustard	nucleus	16.22	18.77
Bra000434.1-P	Field mustard	nucleus	16.81	18.39
Bra037417.1-P	Field mustard	nucleus	16.22	17.74
Bra008552.1-P	Field mustard	nucleus	17.11	17.16
Bra014415.1-P	Field mustard	nucleus	15.63	16.56
Os02t0455900-00	Rice	nucleus	13.27	16.54
Bra030497.1-P	Field mustard	nucleus	16.81	16.1
Bra033294.1-P	Field mustard	nucleus	16.22	15.99
Bra009171.1-P	Field mustard	nucleus	11.21	15.9

Protein Annotations

MapMan:15.5.5.3	MapMan:15.5.7.5	Gene3D:2.40.330.10	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:B3_DNA-bd	EnsemblPlantsGene:Bra014282	EnsemblPlants:Bra014282.1	EnsemblPlants:Bra014282.1-P	InterPro:DNA-bd_dom_sf	InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR003340
InterPro:IPR015300	InterPro:IPR036955	UniProt:M4DCR5	PFAM:PF00847	PFAM:PF02362	PFscan:PS50863
PFscan:PS51032	PANTHER:PTHR31140	PANTHER:PTHR31140:SF13	SMART:SM00380	SMART:SM01019	SUPFAM:SSF101936
SUPFAM:SSF54171	UniParc:UPI0002545DD9	SEG:seg	:	:	:

Description

AT1G51120 (E=1e-128) | AP2 domain-containing transcription factor, putative

Coordinates

chrA08:+:1979165..1980184

Molecular Weight (calculated)

39192.3 Da

IEP (calculated)

8.571

GRAVY (calculated)

-0.631

Length

339 amino acids

Sequence
(BLAST)

001: MVILHEISNE AKTTTEASGS SNSFLRLATK PTVSTTTRIA LSNTATTKYK GVVQQQNGHW GAQIYADHRR IWLGTFKSAA EAAAAYDSAS IKLRGFDANS
101: HRNFPWSELT VHEPDFQILY TTEAVLNMIR DGSYHHKFRD HVMSRSRMAN FNIVESKQES NKCFSCTQLF HKELTPSDVG KLNRLVIPKK YAVKHLPFIS
201: DDQEEGEAVE DVEVVFYDST MRQWKFRYCY WRSSQSFVFT RGWNGFVKEK NLKEKDVIVF YSCDVPSNVR RLEGQRDKFL MIDVDHKGFV APKEENKMVH
301: NRSEGEMKTE NFFNSKLEDE ETKQEEKKGG FMLFGVRIQ

Best Arabidopsis Sequence Match ( AT1G51120.1 )
(BLAST)

001: MDEMSNVAKT TTETSGLTDS VLSLTKRMKP TEVTTTTKPA LSNTTKFKGV VQQQNGHWGA QIYADHRRIW LGTFKSAHEA AAAYDSASIK LRSFDANSHR
101: NFPWSDFTLH EPDFQECYTT EAVLNMIRDG SYQHKFRDFL RIRSQIVANI NIVGSKQVLG GGEGGQESNK CFSCTQLFQK ELTPSDVGKL NRLVIPKKYA
201: VKYMPFISDD QSEKETSEGV EDVEVVFYDR AMRQWKFRYC YWRSSQSFVF TRGWNGFVKE KNLKEKDIIV FYTCDVPNNV KTLEGQSKTF LMIDVHHFSG
301: NGFVVPEEVN KTVHEISDEE MKTETLFTSK VEEETKSEEK KGGFMLFGVR IQ

Arabidopsis Description

AP2/ERF and B3 domain-containing transcription factor At1g51120 [Source:UniProtKB/Swiss-Prot;Acc:Q9C688]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.