Factsheet for Bra018869.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	cytosol, nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37108	Canola	nucleus, plastid	92.81	90.38
Bra018854.1-P	Field mustard	nucleus	80.84	79.41
Bra030458.1-P	Field mustard	nucleus	59.88	63.29
Bra018868.1-P	Field mustard	nucleus	63.17	62.43
AT1G50680.1	Thale cress	nucleus	62.28	61.72
AT1G51120.1	Thale cress	nucleus	64.97	61.65
Bra014282.1-P	Field mustard	nucleus	59.88	59.0
Bra018894.1-P	Field mustard	nucleus	58.38	57.69
Bra030476.1-P	Field mustard	nucleus	55.99	57.54
KRG93082	Soybean	nucleus	44.01	46.08
PGSC0003DMT400085602	Potato	nucleus	16.47	42.97
VIT_11s0037g00010.t01	Wine grape	nucleus	44.31	41.46
Solyc03g083110.1.1	Tomato	nucleus	40.42	40.3
PGSC0003DMT400092316	Potato	nucleus	12.28	30.83
Solyc12g098460.1.1	Tomato	nucleus	18.86	30.14
GSMUA_Achr11P...	Banana	nucleus	28.74	28.57
Bra026509.1-P	Field mustard	nucleus	27.84	28.53
Bra038346.1-P	Field mustard	nucleus, plastid	29.34	28.0
Bra026917.1-P	Field mustard	nucleus	28.44	27.94
GSMUA_Achr8P14650_001	Banana	nucleus	34.43	27.78
Bra019821.1-P	Field mustard	nucleus	27.25	26.69
Bra011002.1-P	Field mustard	nucleus	28.44	26.46
Bra024735.1-P	Field mustard	nucleus	29.04	26.08
Bra005301.1-P	Field mustard	nucleus	17.66	23.79
Bra017262.1-P	Field mustard	nucleus	17.37	23.67
Bra001411.1-P	Field mustard	nucleus	16.47	23.31
Bra034828.1-P	Field mustard	nucleus	16.47	21.32
Bra041023.1-P	Field mustard	nucleus	16.17	20.45
EES14747	Sorghum	plastid	17.07	20.43
Bra005886.1-P	Field mustard	nucleus	15.87	19.85
Zm00001d024354_P001	Maize	nucleus, plastid	16.77	19.65
Bra040478.1-P	Field mustard	nucleus	15.87	18.09
Bra003482.1-P	Field mustard	nucleus	15.27	17.83
Os02t0455800-01	Rice	nucleus	14.07	17.6
Bra004501.1-P	Field mustard	nucleus	15.57	17.51
Bra007646.1-P	Field mustard	nucleus	15.27	17.47
KXG24821	Sorghum	nucleus	14.67	17.19
PGSC0003DMT400040900	Potato	nucleus	7.78	16.99
Bra037417.1-P	Field mustard	nucleus	15.57	16.77
Bra000434.1-P	Field mustard	nucleus	15.57	16.77
Bra008552.1-P	Field mustard	nucleus	16.47	16.27
Bra014415.1-P	Field mustard	nucleus	15.57	16.25
Os02t0455900-00	Rice	nucleus	12.87	15.81
Bra033294.1-P	Field mustard	nucleus	16.17	15.7
Bra009171.1-P	Field mustard	nucleus	10.78	15.06
Bra030497.1-P	Field mustard	nucleus	15.87	14.97

Protein Annotations

MapMan:15.5.5.3	MapMan:15.5.7.5	Gene3D:2.40.330.10	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:B3_DNA-bd	EnsemblPlantsGene:Bra018869	EnsemblPlants:Bra018869.1	EnsemblPlants:Bra018869.1-P	InterPro:DNA-bd_dom_sf	InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR003340
InterPro:IPR015300	InterPro:IPR036955	UniProt:M4DQS6	PFAM:PF00847	PFAM:PF02362	PFscan:PS50863
PFscan:PS51032	PANTHER:PTHR31140	PANTHER:PTHR31140:SF13	SMART:SM00380	SMART:SM01019	SUPFAM:SSF101936
SUPFAM:SSF54171	UniParc:UPI000253EA80	SEG:seg	:	:	:

Description

AT1G51120 (E=1e-108) | AP2 domain-containing transcription factor, putative

Coordinates

chrA06:+:1522433..1523437

Molecular Weight (calculated)

38698.9 Da

IEP (calculated)

9.476

GRAVY (calculated)

-0.601

Length

334 amino acids

Sequence
(BLAST)

001: MDVSKSKASN TSDSYLPPKK RMRLSEPPTE AALVSAAIKK GSFSDNIKYK GVVQQPNSRW GAQIYVDHKR IWLGTFSSAV KAAMAFDSAS IKLRSFDTNS
101: ERNFPWSDLT VQEPVFQNGY TREAVLNMIK DGSYQREFID FLKNRSQAVV GLKQNRRDEE PNKCFSSRQL FQKELTASDV GRLNRLVIPK KYAVKYLPFI
201: SEREEGEIID DVEVVFYDRE MRPWKFRYCY WTSSQSFVFT RGWIGFVREK RLKEKDVITF YTCDVPTLEG QSRKFSMIDI HRFSDNDSVV TDEEVNKTVH
301: DVSDDVMKPE KFFNSKLGEG ENRGGFMLFG VRIQ

Best Arabidopsis Sequence Match ( AT1G51120.1 )
(BLAST)

001: MDEMSNVAKT TTETSGLTDS VLSLTKRMKP TEVTTTTKPA LSNTTKFKGV VQQQNGHWGA QIYADHRRIW LGTFKSAHEA AAAYDSASIK LRSFDANSHR
101: NFPWSDFTLH EPDFQECYTT EAVLNMIRDG SYQHKFRDFL RIRSQIVANI NIVGSKQVLG GGEGGQESNK CFSCTQLFQK ELTPSDVGKL NRLVIPKKYA
201: VKYMPFISDD QSEKETSEGV EDVEVVFYDR AMRQWKFRYC YWRSSQSFVF TRGWNGFVKE KNLKEKDIIV FYTCDVPNNV KTLEGQSKTF LMIDVHHFSG
301: NGFVVPEEVN KTVHEISDEE MKTETLFTSK VEEETKSEEK KGGFMLFGVR IQ

Arabidopsis Description

AP2/ERF and B3 domain-containing transcription factor At1g51120 [Source:UniProtKB/Swiss-Prot;Acc:Q9C688]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.