CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018869.1-P	Field mustard	nucleus	90.38	92.81
CDY37130	Canola	nucleus	80.17	81.12
CDY22814	Canola	nucleus	75.51	76.85
CDY22801	Canola	nucleus	75.22	74.14
CDY37109	Canola	nucleus	60.06	61.86
AT1G50680.1	Thale cress	nucleus	60.64	61.72
AT1G51120.1	Thale cress	nucleus	63.27	61.65
CDY29620	Canola	nucleus	60.64	60.47
CDY35575	Canola	nucleus	60.06	59.71
CDY51249	Canola	nucleus	58.02	58.7
CDY46564	Canola	nucleus	58.02	58.7
CDY22826	Canola	nucleus	57.14	57.99
CDY65812	Canola	nucleus	47.23	57.65
CDY29599	Canola	nucleus	54.52	57.54
CDY25209	Canola	nucleus	57.14	55.21
KRG93082	Soybean	nucleus	42.27	45.45
VIT_11s0037g00010.t01	Wine grape	nucleus	42.27	40.62
Solyc03g083110.1.1	Tomato	nucleus	39.07	40.0
PGSC0003DMT400085602	Potato	nucleus	14.58	39.06
PGSC0003DMT400092316	Potato	nucleus	11.66	30.08
Solyc12g098460.1.1	Tomato	nucleus	18.08	29.67
CDY40973	Canola	nucleus	26.82	29.21
CDY72302	Canola	nucleus	27.7	29.14
CDX81561	Canola	nucleus	28.57	28.57
CDY58354	Canola	nucleus	27.11	28.53
CDY24391	Canola	nucleus	27.7	28.11
CDY45849	Canola	nucleus, plastid	28.57	28.0
CDY67348	Canola	nucleus	12.24	28.0
CDX97996	Canola	nucleus	26.53	28.0
CDY61361	Canola	nucleus	26.53	27.83
GSMUA_Achr11P...	Banana	nucleus	27.11	27.68
CDX84999	Canola	nucleus	28.28	27.4
CDY36099	Canola	nucleus	27.7	27.14
CDY16133	Canola	nucleus	28.28	27.09
CDX99755	Canola	nucleus	26.82	27.06
GSMUA_Achr8P14650_001	Banana	nucleus	32.65	27.05
CDX83547	Canola	nucleus	23.03	24.38
CDX84162	Canola	nucleus	16.04	22.63
CDY43751	Canola	nucleus	15.74	22.22
CDX75073	Canola	nucleus	16.04	22.18
CDX73868	Canola	nucleus	14.87	21.61
CDY43060	Canola	cytosol	10.2	21.47
CDY01036	Canola	nucleus	15.45	20.62
CDY62470	Canola	nucleus	13.41	20.18
EES14747	Sorghum	plastid	16.33	20.07
Zm00001d024354_P001	Maize	nucleus, plastid	16.62	20.0
CDY08512	Canola	nucleus	14.29	19.76
CDY47260	Canola	nucleus	14.58	18.73
CDY69432	Canola	nucleus	14.58	17.99
PGSC0003DMT400040900	Potato	nucleus	7.87	17.65
KXG24821	Sorghum	nucleus	14.58	17.54
CDX67872	Canola	nucleus	14.58	17.54
CDX80996	Canola	nucleus	13.99	17.45
CDX80053	Canola	nucleus	14.87	17.17
CDY11388	Canola	nucleus	14.58	17.12
CDX76605	Canola	nucleus	14.58	17.12
CDY07140	Canola	nucleus	15.16	16.99
CDY41564	Canola	nucleus	14.58	16.84
CDY48008	Canola	nucleus	14.87	16.78
Os02t0455800-01	Rice	nucleus	12.83	16.48
CDY15208	Canola	nucleus	15.45	16.46
CDY27515	Canola	nucleus	14.58	16.45
CDY58763	Canola	nucleus	15.16	16.35
CDY58764	Canola	nucleus	15.16	16.25
CDX83351	Canola	nucleus	14.58	16.23
CDY50908	Canola	nucleus	14.87	16.19
CDY49614	Canola	nucleus	14.58	16.13
CDX90001	Canola	nucleus	16.04	15.99
CDY70080	Canola	nucleus	10.79	15.48
CDX98911	Canola	nucleus	10.79	15.48
CDX97251	Canola	nucleus	15.16	15.34
Os02t0455900-00	Rice	nucleus	11.95	15.07

Protein Annotations

MapMan:15.5.5.3	MapMan:15.5.7.5	Gene3D:2.40.330.10	Gene3D:3.30.730.10	GO:A0A078HJT3	UniProt:A0A078HJT3
InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:B3_DNA-bd	EnsemblPlants:CDY37108	ProteinID:CDY37108	ProteinID:CDY37108.1
ncoils:Coil	InterPro:DNA-bd_dom_sf	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00063329001	InterPro:IPR001471	InterPro:IPR003340	InterPro:IPR015300	InterPro:IPR036955
PFAM:PF00847	PFAM:PF02362	PRINTS:PR00367	PFscan:PS50863	PFscan:PS51032	PANTHER:PTHR31140
PANTHER:PTHR31140:SF13	SMART:SM00380	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54171	UniParc:UPI0004EDF5EA
SEG:seg	:	:	:	:	:

Description

BnaC06g03910DBnaC06g03910D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HJT3]

Coordinates

chrLK032392:+:10270..11301

Molecular Weight (calculated)

39573.0 Da

IEP (calculated)

8.398

GRAVY (calculated)

-0.487

Length

343 amino acids

Sequence
(BLAST)

001: MFLLSSVIPM DIAKSKASNT SDSYLPPKKR MRLSEPPTET TLVSAAIKKG SFSDNIKYKG VVQQPNSRWG AQIYVDHKRI WLGTFSSAAE AAMAFDSASI
101: KLRSFDTISE RNFPWSDLTV QEPVFQNGYT TEAVLNMIKD GSYQREFIDF LKNRSQVVVG LKQNRRDEEP SKCFSSRQLF QKELTASDVG KLNRLVIPKK
201: YAVKYLPFIS EREEGEIVED VEVVFYDREM RRWTFTYCYW TSSKSFVFTR GWIGFVREKS LKEKDVITLY TCDVPTLEGQ SKKFSMIDIH RFSDNDSVAT
301: DEEVNKTVHD ISDDVMKPEK FFNSKFGEEE NRGGFMLFGV RIQ

Best Arabidopsis Sequence Match ( AT1G50680.1 )
(BLAST)

001: MRLDDEPENA LVVSSSPKTV VASGNVKYKG VVQQQNGHWG AQIYADHKRI WLGTFKSADE AATAYDSASI KLRSFDANSH RNFPWSTITL NEPDFQNCYT
101: TETVLNMIRD GSYQHKFRDF LRIRSQIVAS INIGGPKQAR GEVNQESDKC FSCTQLFQKE LTPSDVGKLN RLVIPKKYAV KYMPFISADQ SEKEEGEIVG
201: SVEDVEVVFY DRAMRQWKFR YCYWKSSQSF VFTRGWNSFV KEKNLKEKDV IAFYTCDVPN NVKTLEGQRK NFLMIDVHCF SDNGSVVAEE VSMTVHDSSV
301: QVKKTENLVS SMLEDKETKS EENKGGFMLF GVRIECP

Arabidopsis Description

AP2/ERF and B3 domain-containing transcription factor At1g50680 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6P5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.