Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018854.1-P | Field mustard | nucleus | 88.22 | 90.29 |
| CDY37130 | Canola | nucleus | 86.78 | 89.09 |
| CDY37108 | Canola | nucleus, plastid | 74.14 | 75.22 |
| CDY22814 | Canola | nucleus | 68.1 | 70.33 |
| AT1G51120.1 | Thale cress | nucleus | 63.79 | 63.07 |
| AT1G50680.1 | Thale cress | nucleus | 58.91 | 60.83 |
| CDY37109 | Canola | nucleus | 58.05 | 60.66 |
| CDY29620 | Canola | nucleus | 59.48 | 60.17 |
| CDY35575 | Canola | nucleus | 58.91 | 59.42 |
| CDY46564 | Canola | nucleus | 56.9 | 58.41 |
| CDY51249 | Canola | nucleus | 56.9 | 58.41 |
| CDY22826 | Canola | nucleus | 56.61 | 58.28 |
| CDY29599 | Canola | nucleus | 52.59 | 56.31 |
| CDY25209 | Canola | nucleus | 56.9 | 55.77 |
| CDY65812 | Canola | nucleus | 44.54 | 55.16 |
| KRG93082 | Soybean | nucleus | 40.8 | 44.51 |
| PGSC0003DMT400085602 | Potato | nucleus | 15.52 | 42.19 |
| VIT_11s0037g00010.t01 | Wine grape | nucleus | 41.95 | 40.9 |
| Solyc03g083110.1.1 | Tomato | nucleus | 38.51 | 40.0 |
| CDY67348 | Canola | nucleus | 13.22 | 30.67 |
| CDY40973 | Canola | nucleus | 27.01 | 29.84 |
| CDY58354 | Canola | nucleus | 27.87 | 29.75 |
| CDY72302 | Canola | nucleus | 27.87 | 29.75 |
| CDX97996 | Canola | nucleus | 27.3 | 29.23 |
| CDY61361 | Canola | nucleus | 27.3 | 29.05 |
| CDY24391 | Canola | nucleus | 27.59 | 28.4 |
| CDX81561 | Canola | nucleus | 27.59 | 27.99 |
| CDY45849 | Canola | nucleus, plastid | 27.87 | 27.71 |
| CDX84999 | Canola | nucleus | 28.16 | 27.68 |
| CDX99755 | Canola | nucleus | 27.01 | 27.65 |
| GSMUA_Achr8P14650_001 | Banana | nucleus | 32.76 | 27.54 |
| CDY36099 | Canola | nucleus | 27.59 | 27.43 |
| GSMUA_Achr11P... | Banana | nucleus | 26.44 | 27.38 |
| CDY16133 | Canola | nucleus | 28.16 | 27.37 |
| Solyc12g098460.1.1 | Tomato | nucleus | 16.38 | 27.27 |
| PGSC0003DMT400092316 | Potato | nucleus | 10.06 | 26.32 |
| CDY43060 | Canola | cytosol | 11.49 | 24.54 |
| CDX83547 | Canola | nucleus | 22.7 | 24.38 |
| CDY43751 | Canola | nucleus | 15.8 | 22.63 |
| CDX73868 | Canola | nucleus | 15.23 | 22.46 |
| CDY62470 | Canola | nucleus | 14.66 | 22.37 |
| CDX84162 | Canola | nucleus | 15.52 | 22.22 |
| CDX75073 | Canola | nucleus | 15.52 | 21.77 |
| CDY01036 | Canola | nucleus | 15.8 | 21.4 |
| CDY08512 | Canola | nucleus | 14.94 | 20.97 |
| CDX80996 | Canola | nucleus | 16.09 | 20.36 |
| Zm00001d024354_P001 | Maize | nucleus, plastid | 16.09 | 19.65 |
| CDY47260 | Canola | nucleus | 14.94 | 19.48 |
| CDY69432 | Canola | nucleus | 15.52 | 19.42 |
| CDX67872 | Canola | nucleus | 15.52 | 18.95 |
| EES14747 | Sorghum | plastid | 14.66 | 18.28 |
| CDX80053 | Canola | nucleus | 15.52 | 18.18 |
| CDX76605 | Canola | nucleus | 15.23 | 18.15 |
| CDY11388 | Canola | nucleus | 15.23 | 18.15 |
| CDY41564 | Canola | nucleus | 15.23 | 17.85 |
| CDY48008 | Canola | nucleus | 15.52 | 17.76 |
| CDY27515 | Canola | nucleus | 15.52 | 17.76 |
| CDY15208 | Canola | nucleus | 16.09 | 17.39 |
| CDY07140 | Canola | nucleus | 14.94 | 16.99 |
| CDY58763 | Canola | nucleus | 15.52 | 16.98 |
| CDX83351 | Canola | nucleus | 14.94 | 16.88 |
| CDY58764 | Canola | nucleus | 15.52 | 16.88 |
| CDY50908 | Canola | nucleus | 15.23 | 16.83 |
| CDX97251 | Canola | nucleus | 16.38 | 16.81 |
| CDY49614 | Canola | nucleus | 14.66 | 16.45 |
| CDX90001 | Canola | nucleus | 16.09 | 16.28 |
| Os02t0455800-01 | Rice | nucleus | 11.78 | 15.36 |
| KXG24821 | Sorghum | nucleus | 12.36 | 15.09 |
| PGSC0003DMT400040900 | Potato | nucleus | 6.61 | 15.03 |
| Os02t0455900-00 | Rice | nucleus | 10.92 | 13.97 |
| CDY70080 | Canola | nucleus | 9.2 | 13.39 |
| CDX98911 | Canola | nucleus | 9.2 | 13.39 |
Protein Annotations
| MapMan:15.5.5.3 | MapMan:15.5.7.5 | Gene3D:2.40.330.10 | Gene3D:3.30.730.10 | GO:A0A078GBP3 | UniProt:A0A078GBP3 |
| InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:B3_DNA-bd | EnsemblPlants:CDY22801 | ProteinID:CDY22801 | ProteinID:CDY22801.1 |
| InterPro:DNA-bd_dom_sf | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSBRNA2T00021143001 | InterPro:IPR001471 | InterPro:IPR003340 | InterPro:IPR015300 |
| InterPro:IPR036955 | PFAM:PF02362 | PFscan:PS50863 | PFscan:PS51032 | PANTHER:PTHR31140 | PANTHER:PTHR31140:SF13 |
| SMART:SM00380 | SMART:SM01019 | SUPFAM:SSF101936 | SUPFAM:SSF54171 | TMHMM:TMhelix | UniParc:UPI0004EF060A |
| SEG:seg | : | : | : | : | : |
Description
BnaA06g02760DBnaA06g02760D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GBP3]
Coordinates
chrLK032136:+:145957..147003
Molecular Weight (calculated)
40766.6 Da
IEP (calculated)
9.275
GRAVY (calculated)
-0.537
Length
348 amino acids
Sequence
(BLAST)
(BLAST)
001: MFLVSSAIPM DVAKSETLNT TTDSYLPVKK RMRLNEPPTT DKAPVSASDK TKYKGVVQHQ NGHWGAQIYV DHKRIWLGTF KSAAEAAMSY DSASIKLRAF
101: DANSQRNFPW SDLTVHEPVF QKGYTTEAVL NMIKDGSYQR EFKEFLKNRS QIVSKQNRRD EESNKCFSCT QLFQKELTAS DVGKLNRLVI PKKYAVKYLP
201: FISEREEGEI VEDVEVLFYD REMRPWKFRY CYWTSSQSFV LTRGWIGFVK EKRLKEKDLV TFYTCDVPTL EGQSKKFLMI DVHYFSDNNS AVTDEEVNKT
301: VHNNSSDDVM KPVYIYIYIY IYIYIYIYIS VSKIIDSKNW KENKIMRK
101: DANSQRNFPW SDLTVHEPVF QKGYTTEAVL NMIKDGSYQR EFKEFLKNRS QIVSKQNRRD EESNKCFSCT QLFQKELTAS DVGKLNRLVI PKKYAVKYLP
201: FISEREEGEI VEDVEVLFYD REMRPWKFRY CYWTSSQSFV LTRGWIGFVK EKRLKEKDLV TFYTCDVPTL EGQSKKFLMI DVHYFSDNNS AVTDEEVNKT
301: VHNNSSDDVM KPVYIYIYIY IYIYIYIYIS VSKIIDSKNW KENKIMRK
001: MRLDDEPENA LVVSSSPKTV VASGNVKYKG VVQQQNGHWG AQIYADHKRI WLGTFKSADE AATAYDSASI KLRSFDANSH RNFPWSTITL NEPDFQNCYT
101: TETVLNMIRD GSYQHKFRDF LRIRSQIVAS INIGGPKQAR GEVNQESDKC FSCTQLFQKE LTPSDVGKLN RLVIPKKYAV KYMPFISADQ SEKEEGEIVG
201: SVEDVEVVFY DRAMRQWKFR YCYWKSSQSF VFTRGWNSFV KEKNLKEKDV IAFYTCDVPN NVKTLEGQRK NFLMIDVHCF SDNGSVVAEE VSMTVHDSSV
301: QVKKTENLVS SMLEDKETKS EENKGGFMLF GVRIECP
101: TETVLNMIRD GSYQHKFRDF LRIRSQIVAS INIGGPKQAR GEVNQESDKC FSCTQLFQKE LTPSDVGKLN RLVIPKKYAV KYMPFISADQ SEKEEGEIVG
201: SVEDVEVVFY DRAMRQWKFR YCYWKSSQSF VFTRGWNSFV KEKNLKEKDV IAFYTCDVPN NVKTLEGQRK NFLMIDVHCF SDNGSVVAEE VSMTVHDSSV
301: QVKKTENLVS SMLEDKETKS EENKGGFMLF GVRIECP
Arabidopsis Description
AP2/ERF and B3 domain-containing transcription factor At1g50680 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6P5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.