Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d035982_P001 | Maize | nucleus | 12.15 | 63.64 |
| Bra004501.1-P | Field mustard | nucleus | 34.49 | 53.54 |
| CDX80053 | Canola | nucleus | 34.49 | 53.54 |
| CDY41564 | Canola | nucleus | 34.27 | 53.2 |
| CDY50908 | Canola | nucleus | 34.92 | 51.11 |
| Bra040478.1-P | Field mustard | nucleus | 32.32 | 50.85 |
| CDY27515 | Canola | nucleus | 33.41 | 50.66 |
| CDX83351 | Canola | nucleus | 33.84 | 50.65 |
| AT2G46870.1 | Thale cress | nucleus | 34.06 | 50.65 |
| CDY48008 | Canola | nucleus | 33.19 | 50.33 |
| Bra000434.1-P | Field mustard | nucleus | 33.84 | 50.32 |
| Bra003482.1-P | Field mustard | nucleus | 30.8 | 49.65 |
| AT3G61970.1 | Thale cress | nucleus | 32.1 | 49.5 |
| CDX67872 | Canola | nucleus | 30.59 | 49.47 |
| CDY11388 | Canola | nucleus | 31.02 | 48.97 |
| CDX76605 | Canola | nucleus | 31.02 | 48.97 |
| Bra007646.1-P | Field mustard | nucleus | 30.8 | 48.63 |
| GSMUA_Achr4P30170_001 | Banana | nucleus | 26.25 | 48.59 |
| GSMUA_Achr4P26430_001 | Banana | nucleus | 26.25 | 48.4 |
| Solyc08g013700.1.1 | Tomato | nucleus | 30.59 | 47.96 |
| CDY69432 | Canola | nucleus | 28.85 | 47.84 |
| PGSC0003DMT400015010 | Potato | nucleus | 31.02 | 47.67 |
| Zm00001d010077_P001 | Maize | nucleus | 26.68 | 47.49 |
| Os03t0120900-01 | Rice | nucleus | 31.67 | 46.95 |
| PGSC0003DMT400015011 | Potato | nucleus | 31.45 | 46.33 |
| CDY58763 | Canola | nucleus | 31.89 | 46.23 |
| Zm00001d029749_P001 | Maize | nucleus | 27.11 | 45.79 |
| Bra014415.1-P | Field mustard | nucleus | 31.67 | 45.62 |
| CDY58764 | Canola | nucleus | 31.67 | 45.62 |
| EER92015 | Sorghum | nucleus | 27.11 | 45.62 |
| Solyc08g013690.1.1 | Tomato | nucleus | 31.89 | 45.37 |
| Zm00001d048815_P001 | Maize | nucleus | 22.78 | 45.26 |
| TraesCS4B01G348500.1 | Wheat | nucleus | 31.24 | 45.14 |
| GSMUA_Achr1P03600_001 | Banana | nucleus | 32.1 | 44.85 |
| TraesCS5A01G516600.1 | Wheat | nucleus | 30.8 | 44.8 |
| Zm00001d047359_P001 | Maize | nucleus | 26.9 | 44.77 |
| GSMUA_Achr4P24970_001 | Banana | nucleus | 22.78 | 44.68 |
| GSMUA_Achr5P12850_001 | Banana | nucleus | 20.39 | 44.55 |
| TraesCS1A01G200500.1 | Wheat | nucleus | 26.68 | 44.24 |
| GSMUA_Achr5P10220_001 | Banana | nucleus | 25.81 | 43.75 |
| GSMUA_Achr7P04630_001 | Banana | nucleus | 19.52 | 43.69 |
| TraesCS7A01G020800.1 | Wheat | nucleus | 18.66 | 43.43 |
| TraesCS1B01G215000.1 | Wheat | nucleus | 25.81 | 43.27 |
| Os06t0107800-02 | Rice | nucleus | 18.66 | 43.22 |
| TraesCS7A01G461000.1 | Wheat | nucleus | 18.22 | 43.08 |
| TraesCS1D01G203900.1 | Wheat | nucleus | 27.11 | 42.96 |
| HORVU7Hr1G046950.1 | Barley | nucleus | 25.38 | 42.7 |
| Os10t0537100-00 | Rice | nucleus | 28.85 | 42.63 |
| TraesCS7B01G362500.1 | Wheat | nucleus | 18.0 | 42.35 |
| TraesCS7D01G448900.1 | Wheat | nucleus | 17.79 | 41.84 |
| Os04t0581400-01 | Rice | nucleus | 26.46 | 41.64 |
| HORVU1Hr1G051780.2 | Barley | nucleus | 26.46 | 41.64 |
| OQU93364 | Sorghum | nucleus | 29.72 | 41.52 |
| HORVU0Hr1G022200.1 | Barley | nucleus | 18.0 | 41.5 |
| TraesCS4A01G472700.1 | Wheat | nucleus | 19.52 | 41.47 |
| Solyc08g083400.2.1 | Tomato | nucleus | 29.93 | 41.32 |
| HORVU4Hr1G084950.3 | Barley | nucleus | 30.37 | 41.06 |
| Zm00001d027409_P001 | Maize | nucleus | 29.07 | 40.98 |
| TraesCS7A01G020700.1 | Wheat | nucleus | 19.09 | 40.93 |
| VIT_02s0025g03000.t01 | Wine grape | nucleus | 40.13 | 40.57 |
| TraesCS7D01G017000.1 | Wheat | nucleus | 19.09 | 40.55 |
| GSMUA_Achr9P18780_001 | Banana | nucleus | 24.95 | 40.21 |
| GSMUA_Achr2P00400_001 | Banana | nucleus | 24.95 | 39.93 |
| HORVU7Hr1G002230.1 | Barley | nucleus | 18.87 | 39.55 |
| Zm00001d035903_P001 | Maize | nucleus | 18.87 | 38.84 |
| KXG19112 | Sorghum | nucleus | 17.14 | 38.54 |
| PGSC0003DMT400031863 | Potato | nucleus | 33.84 | 38.42 |
| Zm00001d024103_P001 | Maize | nucleus | 18.66 | 38.39 |
| GSMUA_Achr2P10230_001 | Banana | nucleus | 24.73 | 37.5 |
| TraesCS2D01G392400.1 | Wheat | nucleus | 33.19 | 37.41 |
| Os02t0683500-01 | Rice | nucleus | 33.41 | 37.38 |
| TraesCS2B01G412700.1 | Wheat | nucleus | 32.97 | 37.16 |
| Zm00001d002562_P001 | Maize | nucleus | 32.97 | 37.16 |
| HORVU6Hr1G066190.2 | Barley | nucleus | 32.97 | 37.16 |
| Zm00001d026005_P001 | Maize | nucleus | 32.54 | 37.13 |
| EES12712 | Sorghum | nucleus | 33.62 | 36.9 |
| TraesCS6D01G240600.1 | Wheat | nucleus | 32.97 | 36.72 |
| TraesCS6A01G259600.1 | Wheat | nucleus | 32.97 | 36.72 |
| TraesCS6B01G286900.1 | Wheat | nucleus | 32.54 | 36.67 |
| GSMUA_AchrUn_... | Banana | cytosol | 19.09 | 36.51 |
| TraesCS2A01G394700.1 | Wheat | nucleus | 31.89 | 36.39 |
| VIT_14s0083g00130.t01 | Wine grape | nucleus | 22.13 | 35.92 |
| GSMUA_Achr4P12210_001 | Banana | nucleus | 16.92 | 34.82 |
| EES13386 | Sorghum | nucleus | 19.09 | 34.78 |
| VIT_08s0007g02810.t01 | Wine grape | nucleus | 21.48 | 34.74 |
| KXG19111 | Sorghum | nucleus | 17.79 | 34.45 |
| Zm00001d024545_P001 | Maize | nucleus | 18.44 | 34.14 |
| GSMUA_Achr5P20340_001 | Banana | nucleus | 24.95 | 34.12 |
| Zm00001d051471_P001 | Maize | nucleus | 30.37 | 33.33 |
| Zm00001d017618_P001 | Maize | nucleus | 29.93 | 32.7 |
| EES07445 | Sorghum | nucleus | 30.59 | 32.49 |
| Os08t0157700-00 | Rice | nucleus | 20.17 | 32.4 |
| VIT_01s0011g03070.t01 | Wine grape | nucleus | 25.16 | 30.69 |
| VIT_11s0037g00010.t01 | Wine grape | nucleus | 19.31 | 24.93 |
Protein Annotations
| EntrezGene:100259130 | wikigene:100259130 | MapMan:15.5.5.3 | Gene3D:2.40.330.10 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom |
| InterPro:AP2/ERF_dom_sf | InterPro:B3_DNA-bd | ProteinID:CCB61315 | ProteinID:CCB61315.1 | ncoils:Coil | InterPro:DNA-bd_dom_sf |
| InterPro:DNA-bd_pseudobarrel_sf | UniProt:F6I2Z8 | EMBL:FN596739 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR003340 | InterPro:IPR015300 | InterPro:IPR036955 | EntrezGene:LOC100259130 |
| wikigene:LOC100259130 | PFAM:PF02362 | PFscan:PS50863 | PFscan:PS51032 | PANTHER:PTHR31140 | PANTHER:PTHR31140:SF38 |
| SMART:SM00380 | SMART:SM01019 | SUPFAM:SSF101936 | SUPFAM:SSF54171 | UniParc:UPI0001984E28 | ArrayExpress:VIT_15s0048g02370 |
| EnsemblPlantsGene:VIT_15s0048g02370 | EnsemblPlants:VIT_15s0048g02370.t01 | unigene:Vvi.25259 | RefSeq:XP_002268399 | RefSeq:XP_002268399.1 | SEG:seg |
Description
No Description!
Coordinates
chr15:-:16539821..16542081
Molecular Weight (calculated)
51725.0 Da
IEP (calculated)
6.339
GRAVY (calculated)
-0.815
Length
461 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFGQEMKGF CDKEEEQEEE EEEEEEEEEI MGETCKVPFS SSSSSCASPM YKGVAPEPYR YEQQQQQRAW LGTSEPEEEA ARSYDRAALE LGGPDGVTDS
101: SRKLEFVNLS LRNNEDGDGG GGCSSSVGGG VCVEREHMFD KVVTPSDVGK LNRLVIPKQH AEKYFPLDSS ASDKGLLLNF EDRDGKPWRF RYSYWNSSQS
201: YVMTKGWSRF VKEKKLDAGD IVSFERGVGE SGKDRLYIDW RRRPDAPDPT SLSHLHLPTQ LPFSQSVRWG RLYSLPQSPS MSMNMPQGHD HMQQLNYSSI
301: HPYHRHHHHH PHHHHHHHHH HHQRNTLGGG YHDYNAVTSG SGSLYYLSSS SSSHQIGAVQ QGGDAPMVIN SVPVVHGKTT AKRLRLFGVN MECSTPDDHP
401: ECNILPSTAI PHVTMASLSP HLPSSSLPPL QLRLFNGSPL QAVPDEFPKK GKTSLSFDLD L
101: SRKLEFVNLS LRNNEDGDGG GGCSSSVGGG VCVEREHMFD KVVTPSDVGK LNRLVIPKQH AEKYFPLDSS ASDKGLLLNF EDRDGKPWRF RYSYWNSSQS
201: YVMTKGWSRF VKEKKLDAGD IVSFERGVGE SGKDRLYIDW RRRPDAPDPT SLSHLHLPTQ LPFSQSVRWG RLYSLPQSPS MSMNMPQGHD HMQQLNYSSI
301: HPYHRHHHHH PHHHHHHHHH HHQRNTLGGG YHDYNAVTSG SGSLYYLSSS SSSHQIGAVQ QGGDAPMVIN SVPVVHGKTT AKRLRLFGVN MECSTPDDHP
401: ECNILPSTAI PHVTMASLSP HLPSSSLPPL QLRLFNGSPL QAVPDEFPKK GKTSLSFDLD L
001: MMTDLSLTRD EDEEEAKPLA EEEGAREVAD REHMFDKVVT PSDVGKLNRL VIPKQHAERF FPLDSSSNEK GLLLNFEDLT GKSWRFRYSY WNSSQSYVMT
101: KGWSRFVKDK KLDAGDIVSF QRCVGDSGRD SRLFIDWRRR PKVPDHPHFA AGAMFPRFYS FPSTNYSLYN HQQQRHHHSG GGYNYHQIPR EFGYGYFVRS
201: VDQRNNPAAA VADPLVIESV PVMMHGRANQ ELVGTAGKRL RLFGVDMECG ESGMTNSTEE ESSSSGGSLP RGGGGGASSS SFFQLRLGSS SEDDHFTKKG
301: KSSLSFDLDQ
101: KGWSRFVKDK KLDAGDIVSF QRCVGDSGRD SRLFIDWRRR PKVPDHPHFA AGAMFPRFYS FPSTNYSLYN HQQQRHHHSG GGYNYHQIPR EFGYGYFVRS
201: VDQRNNPAAA VADPLVIESV PVMMHGRANQ ELVGTAGKRL RLFGVDMECG ESGMTNSTEE ESSSSGGSLP RGGGGGASSS SFFQLRLGSS SEDDHFTKKG
301: KSSLSFDLDQ
Arabidopsis Description
NGA1B3 domain-containing transcription factor NGA1 [Source:UniProtKB/Swiss-Prot;Acc:O82799]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.