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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 3
  • nucleus 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:plastid
MultiLoc:nucleus
Plant-mPloc:plastid
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Os01t0267900-01
Os01t0279300-01
Os01t0810300-01
Os01t0917900-01
Os02t0168000-02
Os02t0742200-01
Os03t0319300-01
Os05t0491000-01
Os05t0491100-01
Os06t0234200-03
Os07t0687200-02
Os09t0505000-00
Os12t0603800-00

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G27690.1 Os01t0267900-01 AT2G41100.1 17360592
AT1G27690.1 Os01t0279300-01 AT2G41100.1 17360592
AT1G27690.1 Os01t0810300-01 AT2G41100.1 17360592
AT1G27690.1 Os03t0319300-01 AT2G41100.1 17360592
AT1G27690.1 Os05t0491000-01 AT2G41100.1 17360592
AT1G27690.1 Os05t0491100-01 AT2G41100.1 17360592
AT1G27690.1 Os07t0687200-02 AT2G41100.1 17360592
AT1G27690.1 Os12t0603800-00 AT2G41100.1 17360592
AT1G27690.1 Os01t0917900-01 AT3G07120.1 21798944
AT1G27690.1 Os09t0505000-00 AT3G07120.1 21798944
AT1G49840.1 Os02t0168000-02 AT1G21840.1 21798944
AT3G19540.1 Os02t0742200-01 AT5G62880.1 21798944
AT3G19540.1 Os06t0234200-03 AT5G62880.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2D01G192800.1 Wheat nucleus 85.33 87.35
TraesCS2B01G211900.1 Wheat nucleus 85.52 87.03
TraesCS2A01G194900.1 Wheat nucleus 85.14 86.81
EER99634 Sorghum nucleus 87.26 86.59
Zm00001d006749_P001 Maize cytosol 82.63 81.37
Zm00001d022006_P001 Maize cytosol, plastid 85.91 79.89
VIT_03s0091g00410.t01 Wine grape plastid 68.15 74.32
KRG91072 Soybean plastid 63.9 71.49
KRH35700 Soybean plastid 63.51 71.21
Solyc01g107350.2.1 Tomato plastid 64.48 71.06
PGSC0003DMT400066530 Potato plastid 64.29 70.85
VIT_18s0001g09450.t01 Wine grape plastid 63.13 69.72
Os12t0581300-01 Rice cytosol 21.24 69.62
Os03t0606100-01 Rice cytosol 59.07 69.55
KRH05611 Soybean plastid 63.71 69.33
KRH15430 Soybean plastid 63.13 69.13
PGSC0003DMT400055468 Potato plastid 62.55 68.94
CDY50147 Canola mitochondrion 57.92 68.34
CDX95439 Canola mitochondrion 57.14 68.05
Bra038214.1-P Field mustard mitochondrion, plastid 59.07 66.67
CDY67693 Canola mitochondrion 57.53 65.64
AT3G19540.1 Thale cress plastid 61.39 65.57
CDY46168 Canola mitochondrion 57.53 65.35
CDY16530 Canola plastid 56.76 65.04
Bra022430.1-P Field mustard mitochondrion, plastid 58.88 65.03
Zm00001d016585_P002 Maize extracellular, plasma membrane 31.66 64.82
CDY32838 Canola plastid 56.18 63.96
Solyc04g078190.2.1 Tomato nucleus, plastid 35.91 63.48
Bra014219.1-P Field mustard plastid 58.3 61.89
AT1G27690.1 Thale cress plastid 50.19 60.05
AT1G49840.1 Thale cress plastid 57.14 59.92
CDY03939 Canola cytosol 12.55 55.08
CDX90103 Canola mitochondrion, plastid 48.46 49.51
CDY67976 Canola mitochondrion, plastid 48.46 49.51
Bra010924.1-P Field mustard mitochondrion, plastid 50.77 49.25
Os03t0167400-00 Rice cytosol 33.2 46.99
Os03t0267500-01 Rice plasma membrane 37.84 44.44
Os10t0411100-00 Rice cytosol, peroxisome, plasma membrane 33.4 38.62
Os05t0252100-01 Rice cytosol 36.1 38.32
Protein Annotations
EnsemblPlants:Os07t0591100-01EnsemblPlantsGene:Os07g0591100EntrezGene:4343777InterPro:DUF620PANTHER:PTHR31300PANTHER:PTHR31300:SF5
PFAM:PF04788ProteinID:BAC82995.1ProteinID:BAT02437.1RefSeq:XP_015645330.1SEG:segUniParc:UPI00001BF17F
UniProt:Q6ZLH2MapMan:27.4.5.3::::
Description
Protein of unknown function DUF620 family protein. (Os07t0591100-01)
Coordinates
chr7:-:24087353..24089505
Molecular Weight (calculated)
55772.9 Da
IEP (calculated)
10.278
GRAVY (calculated)
-0.320
Length
518 amino acids
Sequence
(BLAST)
001: MEKERKQGFF AALKEEVVRG LSPARSRGKS PARSASPGRM LIPRRRKEKQ QQPPPEKLLQ QYFAEPLISR SGSLRPGGEA LAPLIEGPDP ERLAAGGDFA
101: GGEESARREG FGRWVRGQLA RTPSVASSAA AAAAASPGGS GDSFRRSDLR LLLGVMGAPL APIPSKLADP LPLLSIKGTP IESSSAQYIL QQYMAASGGY
201: RLLQSVRNAY AMGKVRMVAS EFETATRVVK NRGPSGRGAA SVEQGGFVLW QMAPDMWYVE LAVGGSKVHA GSNGRLVWRH TPWLGAHAAK GPVRPLRRVL
301: QGLDPLTTAG LFAEARCVGE KKVNGEDCFI LKLSADPQTL KQRSEGPAEI IRHVLFGYFS QRTGLIVHIE DSHLTRIQPH SGGDAVYWET TISSALEDYR
401: PVEGIMIAHA GRSAVTLFRF GEAAMSHTKT RMEEAWSIEE VAFNVPGLSV DCFIPPADIR SGPVGESCEL PPPAAAPHGE RARHPARVAA VDRAPPHHNA
501: GGANVGRRGD KIMWRVEV
Best Arabidopsis Sequence Match ( AT3G19540.1 )
(BLAST)
001: MEKKQGFFSA LRHEVVRGLS PSRSRARSRS VSPARSSSPM SALTWGRKNL TGGGGGGGGG GYYLAQPEQL IGRSGSLRPV MEGPDPDEGG GGGNIGESKR
101: LGSGLGHWVK GQLSRAPSVA ATAAYRRNDL RLLLGVMGAP LAPIHVSSSD PLPHLSIKNT PIETSSAQYI LQQYTAASGG QKLQNSIKNA YAMGKLKMIT
201: SELETATRTV RNRNPSKAET GGFVLWQMNP DMWYVELAVG GSKVRAGCNG KLVWRHTPWL GSHTAKGPVR PLRRGLQGLD PRTTAAMFAE AKCIGEKKVN
301: GEDCFILKLC TDPETLKARS EGPAEIIRHV LFGYFSQKTG LLVHIEDSHL TRIQSNGGET VFWETTYNSS LDDYRQVEGI MIAHSGHSVV TLFRFGEVAT
401: SHTRTKMEES WTIEEVAFNV PGLSLDCFIP PADLKTGSLT ESCEYPQEER GKNNTLALSA AHRAKVAALE NGSLEDHRPV WHTDV
Arabidopsis Description
AT3g19540/T31J18_4 [Source:UniProtKB/TrEMBL;Acc:Q9LH41]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.