Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 2
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY50147 | Canola | mitochondrion | 83.71 | 92.48 |
| CDX95439 | Canola | mitochondrion | 82.27 | 91.72 |
| Bra038214.1-P | Field mustard | mitochondrion, plastid | 86.8 | 91.72 |
| CDY46168 | Canola | mitochondrion | 85.36 | 90.79 |
| CDY67693 | Canola | mitochondrion | 84.74 | 90.53 |
| Bra022430.1-P | Field mustard | mitochondrion, plastid | 87.42 | 90.41 |
| AT1G49840.1 | Thale cress | plastid | 80.62 | 79.15 |
| KRH35700 | Soybean | plastid | 73.61 | 77.27 |
| VIT_03s0091g00410.t01 | Wine grape | plastid | 75.26 | 76.84 |
| PGSC0003DMT400066530 | Potato | plastid | 74.43 | 76.81 |
| KRG91072 | Soybean | plastid | 73.2 | 76.67 |
| Solyc01g107350.2.1 | Tomato | plastid | 73.81 | 76.17 |
| GSMUA_Achr4P14230_001 | Banana | cytosol, mitochondrion, nucleus, peroxisome | 68.04 | 72.05 |
| GSMUA_Achr4P32590_001 | Banana | cytosol | 66.8 | 71.68 |
| GSMUA_Achr6P16820_001 | Banana | cytosol | 64.33 | 70.75 |
| GSMUA_Achr3P02230_001 | Banana | cytosol, plastid | 43.71 | 69.06 |
| GSMUA_Achr10P... | Banana | cytosol | 54.02 | 67.35 |
| OQU79433 | Sorghum | cytosol | 62.27 | 67.26 |
| GSMUA_Achr7P00620_001 | Banana | mitochondrion | 56.29 | 67.08 |
| GSMUA_Achr10P... | Banana | plastid | 57.53 | 66.59 |
| TraesCS5B01G078600.2 | Wheat | cytosol | 58.76 | 66.28 |
| GSMUA_Achr2P21540_001 | Banana | plastid | 59.59 | 66.13 |
| HORVU5Hr1G018870.3 | Barley | cytosol, mitochondrion | 62.68 | 66.09 |
| TraesCS5D01G085100.1 | Wheat | cytosol | 62.68 | 65.66 |
| TraesCS4D01G076200.1 | Wheat | cytosol, mitochondrion | 61.65 | 65.43 |
| GSMUA_Achr6P24020_001 | Banana | cytosol | 54.02 | 65.34 |
| Os03t0606100-01 | Rice | cytosol | 59.18 | 65.23 |
| TraesCS5A01G072300.1 | Wheat | cytosol | 62.27 | 65.23 |
| TraesCS4A01G237300.1 | Wheat | cytosol, mitochondrion | 61.44 | 65.21 |
| TraesCS4B01G077800.1 | Wheat | cytosol | 61.44 | 65.21 |
| GSMUA_Achr2P13470_001 | Banana | cytosol | 58.76 | 64.92 |
| Os12t0581300-01 | Rice | cytosol | 21.03 | 64.56 |
| GSMUA_Achr7P26350_001 | Banana | cytosol, mitochondrion, peroxisome, plastid | 62.27 | 62.92 |
| TraesCS2D01G192800.1 | Wheat | nucleus | 64.95 | 62.25 |
| TraesCS2B01G211900.1 | Wheat | nucleus | 64.95 | 61.89 |
| EER91248 | Sorghum | cytosol | 59.59 | 61.88 |
| TraesCS2A01G194900.1 | Wheat | nucleus | 64.74 | 61.81 |
| Zm00001d030837_P001 | Maize | cytosol, mitochondrion | 60.82 | 61.72 |
| AT1G27690.1 | Thale cress | plastid | 54.85 | 61.43 |
| Os07t0591100-01 | Rice | nucleus | 65.57 | 61.39 |
| Zm00001d013746_P001 | Maize | cytosol | 58.14 | 60.91 |
| EER99634 | Sorghum | nucleus | 64.33 | 59.77 |
| OQU92347 | Sorghum | mitochondrion, plastid | 59.18 | 58.93 |
| Zm00001d006749_P001 | Maize | cytosol | 63.09 | 58.17 |
| Zm00001d047324_P001 | Maize | cytosol | 58.56 | 57.96 |
| Zm00001d022006_P001 | Maize | cytosol, plastid | 63.71 | 55.48 |
| HORVU4Hr1G013190.8 | Barley | mitochondrion | 57.11 | 54.85 |
| Zm00001d016585_P002 | Maize | extracellular, plasma membrane | 28.25 | 54.15 |
| AT1G79420.1 | Thale cress | mitochondrion | 39.38 | 45.8 |
| AT5G66740.1 | Thale cress | cytosol | 34.43 | 45.14 |
| AT5G06610.1 | Thale cress | cytosol | 34.23 | 45.11 |
| AT5G05840.1 | Thale cress | cytosol | 37.32 | 41.23 |
| AT1G75160.1 | Thale cress | cytosol | 32.37 | 39.75 |
| AT3G55720.1 | Thale cress | nucleus | 35.05 | 38.81 |
Protein Annotations
| MapMan:27.4.5.3 | EntrezGene:821490 | ProteinID:AEE76255.1 | ArrayExpress:AT3G19540 | EnsemblPlantsGene:AT3G19540 | RefSeq:AT3G19540 |
| TAIR:AT3G19540 | RefSeq:AT3G19540-TAIR-G | EnsemblPlants:AT3G19540.1 | TAIR:AT3G19540.1 | EMBL:AY054261 | EMBL:AY133526 |
| Unigene:At.21232 | ProteinID:BAB01975.1 | InterPro:DUF620 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 |
| GO:GO:0005623 | GO:GO:0005886 | GO:GO:0016020 | GO:GO:0016740 | RefSeq:NP_566642.1 | PFAM:PF04788 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PANTHER:PTHR31300 |
| PANTHER:PTHR31300:SF1 | UniProt:Q9LH41 | UniParc:UPI00000A12C1 | SEG:seg | : | : |
Description
AT3g19540/T31J18_4 [Source:UniProtKB/TrEMBL;Acc:Q9LH41]
Coordinates
chr3:+:6780563..6783166
Molecular Weight (calculated)
52561.5 Da
IEP (calculated)
9.535
GRAVY (calculated)
-0.416
Length
485 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKKQGFFSA LRHEVVRGLS PSRSRARSRS VSPARSSSPM SALTWGRKNL TGGGGGGGGG GYYLAQPEQL IGRSGSLRPV MEGPDPDEGG GGGNIGESKR
101: LGSGLGHWVK GQLSRAPSVA ATAAYRRNDL RLLLGVMGAP LAPIHVSSSD PLPHLSIKNT PIETSSAQYI LQQYTAASGG QKLQNSIKNA YAMGKLKMIT
201: SELETATRTV RNRNPSKAET GGFVLWQMNP DMWYVELAVG GSKVRAGCNG KLVWRHTPWL GSHTAKGPVR PLRRGLQGLD PRTTAAMFAE AKCIGEKKVN
301: GEDCFILKLC TDPETLKARS EGPAEIIRHV LFGYFSQKTG LLVHIEDSHL TRIQSNGGET VFWETTYNSS LDDYRQVEGI MIAHSGHSVV TLFRFGEVAT
401: SHTRTKMEES WTIEEVAFNV PGLSLDCFIP PADLKTGSLT ESCEYPQEER GKNNTLALSA AHRAKVAALE NGSLEDHRPV WHTDV
101: LGSGLGHWVK GQLSRAPSVA ATAAYRRNDL RLLLGVMGAP LAPIHVSSSD PLPHLSIKNT PIETSSAQYI LQQYTAASGG QKLQNSIKNA YAMGKLKMIT
201: SELETATRTV RNRNPSKAET GGFVLWQMNP DMWYVELAVG GSKVRAGCNG KLVWRHTPWL GSHTAKGPVR PLRRGLQGLD PRTTAAMFAE AKCIGEKKVN
301: GEDCFILKLC TDPETLKARS EGPAEIIRHV LFGYFSQKTG LLVHIEDSHL TRIQSNGGET VFWETTYNSS LDDYRQVEGI MIAHSGHSVV TLFRFGEVAT
401: SHTRTKMEES WTIEEVAFNV PGLSLDCFIP PADLKTGSLT ESCEYPQEER GKNNTLALSA AHRAKVAALE NGSLEDHRPV WHTDV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.