Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009139.1-P | Field mustard | cytosol | 95.22 | 94.14 |
| CDX70123 | Canola | cytosol | 94.99 | 94.13 |
| CDX98870 | Canola | cytosol | 94.76 | 93.69 |
| VIT_13s0019g03180.t01 | Wine grape | cytosol | 65.6 | 67.61 |
| KRH31070 | Soybean | cytosol | 65.83 | 66.28 |
| KRG97798 | Soybean | cytosol | 66.06 | 66.06 |
| KRH73113 | Soybean | cytosol | 62.64 | 64.86 |
| PGSC0003DMT400059652 | Potato | cytosol | 61.28 | 64.2 |
| Solyc03g078650.2.1 | Tomato | cytosol, nucleus, plastid | 61.28 | 64.05 |
| KRH15018 | Soybean | cytosol | 62.19 | 63.93 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 53.76 | 62.27 |
| PGSC0003DMT400069768 | Potato | cytosol | 28.25 | 61.69 |
| PGSC0003DMT400069765 | Potato | cytosol | 61.73 | 61.04 |
| Solyc05g052860.2.1 | Tomato | cytosol | 61.28 | 60.72 |
| GSMUA_Achr5P28960_001 | Banana | cytosol | 60.14 | 60.55 |
| GSMUA_Achr6P33890_001 | Banana | cytosol | 49.89 | 57.18 |
| TraesCS4A01G093200.1 | Wheat | cytosol, nucleus, plastid | 56.04 | 55.03 |
| TraesCS4B01G211300.1 | Wheat | cytosol, nucleus, plastid | 55.81 | 54.93 |
| Os03t0267500-01 | Rice | plasma membrane | 55.13 | 54.88 |
| EER95119 | Sorghum | cytosol | 55.35 | 54.85 |
| AT5G66740.1 | Thale cress | cytosol | 46.01 | 54.59 |
| TraesCS4D01G211900.1 | Wheat | cytosol, nucleus, plastid | 55.81 | 54.44 |
| AT3G55720.1 | Thale cress | nucleus | 54.21 | 54.34 |
| Zm00001d028565_P002 | Maize | cytosol | 55.58 | 53.04 |
| Zm00001d047840_P001 | Maize | cytosol, peroxisome, plastid | 54.21 | 52.31 |
| AT1G75160.1 | Thale cress | cytosol | 45.33 | 50.38 |
| HORVU4Hr1G060590.5 | Barley | mitochondrion | 56.04 | 49.2 |
| AT1G27690.1 | Thale cress | plastid | 37.81 | 38.34 |
| AT3G19540.1 | Thale cress | plastid | 41.23 | 37.32 |
| AT5G06610.1 | Thale cress | cytosol | 30.98 | 36.96 |
| AT1G79420.1 | Thale cress | mitochondrion | 34.62 | 36.45 |
| AT1G49840.1 | Thale cress | plastid | 40.32 | 35.83 |
Protein Annotations
| MapMan:27.4.5.3 | EntrezGene:830469 | ProteinID:AED90931.1 | ArrayExpress:AT5G05840 | EnsemblPlantsGene:AT5G05840 | RefSeq:AT5G05840 |
| TAIR:AT5G05840 | RefSeq:AT5G05840-TAIR-G | EnsemblPlants:AT5G05840.1 | TAIR:AT5G05840.1 | Unigene:At.51050 | ProteinID:BAB09678.1 |
| InterPro:DUF620 | RefSeq:NP_196203.1 | PFAM:PF04788 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0007611 |
| PO:PO:0009010 | PO:PO:0009029 | PO:PO:0009031 | PO:PO:0009046 | PO:PO:0025022 | PANTHER:PTHR31300 |
| PANTHER:PTHR31300:SF2 | UniProt:Q9FFJ4 | UniParc:UPI00000A65C3 | SEG:seg | : | : |
Description
Emb [Source:UniProtKB/TrEMBL;Acc:Q9FFJ4]
Coordinates
chr5:-:1757065..1760666
Molecular Weight (calculated)
48865.3 Da
IEP (calculated)
5.078
GRAVY (calculated)
-0.388
Length
439 amino acids
Sequence
(BLAST)
(BLAST)
001: MRKLCPNYNL EDGLETVLEV PMPEELFAAS KTKPGWNQMK SYWSKPTATA TGTATATNMT RLFGGRNAEI QLLLGVVGAP LIPLPVQPDH HNDYENPIHK
101: DIKDQPLEMS MAQYIVKQYI AAVGGDRALN AVESMYAMGK VRMTASEFCT GEGSLNSKMV KARSIKSGGG EVGGFVLWQK GIELWCLELV VSGCKISAGS
201: DAKVAWRQTP WHPSHASRGP PRPLRRFLQG LDPKSTANLF ARSVCMGEKK INDEDCFILK LDAEPSALKA RSSSNVEIIR HTVWGCFSQR TGLLIQLEDS
301: HLLRIKAQDD NSIFWETTME SLIQDYRTVD GILVAHAGKS SVSLFRFGEN SDNHSRTRME ETWEIEEMDF NIKGLSMDCF LPPSDLKKDD DEEEEIECGL
401: AANNEKLPMK IRSASLRISS SKVLAIVEEE DESEVTEET
101: DIKDQPLEMS MAQYIVKQYI AAVGGDRALN AVESMYAMGK VRMTASEFCT GEGSLNSKMV KARSIKSGGG EVGGFVLWQK GIELWCLELV VSGCKISAGS
201: DAKVAWRQTP WHPSHASRGP PRPLRRFLQG LDPKSTANLF ARSVCMGEKK INDEDCFILK LDAEPSALKA RSSSNVEIIR HTVWGCFSQR TGLLIQLEDS
301: HLLRIKAQDD NSIFWETTME SLIQDYRTVD GILVAHAGKS SVSLFRFGEN SDNHSRTRME ETWEIEEMDF NIKGLSMDCF LPPSDLKKDD DEEEEIECGL
401: AANNEKLPMK IRSASLRISS SKVLAIVEEE DESEVTEET
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.