Factsheet for GSMUA_Achr6P33890_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P28960_001	Banana	cytosol	80.94	71.1
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	68.15	68.87
TraesCS4B01G211300.1	Wheat	cytosol, nucleus, plastid	63.45	54.48
EER95119	Sorghum	cytosol	62.92	54.4
VIT_13s0019g03180.t01	Wine grape	cytosol	60.31	54.23
TraesCS4A01G093200.1	Wheat	cytosol, nucleus, plastid	62.92	53.91
TraesCS4D01G211900.1	Wheat	cytosol, nucleus, plastid	62.92	53.56
Os03t0267500-01	Rice	plasma membrane	60.84	52.83
Zm00001d028565_P002	Maize	cytosol	63.45	52.83
PGSC0003DMT400059652	Potato	cytosol	56.92	52.03
GSMUA_Achr4P27870_001	Banana	cytosol	51.44	51.84
Solyc03g078650.2.1	Tomato	cytosol, nucleus, plastid	56.66	51.67
Zm00001d047840_P001	Maize	cytosol, peroxisome, plastid	60.05	50.55
GSMUA_Achr2P13560_001	Banana	cytosol	49.61	50.4
CDX70123	Canola	cytosol	57.96	50.11
Bra009139.1-P	Field mustard	cytosol	57.96	50.0
PGSC0003DMT400069765	Potato	cytosol	57.96	50.0
KRH31070	Soybean	cytosol	56.92	50.0
AT5G05840.1	Thale cress	cytosol	57.18	49.89
CDX98870	Canola	cytosol	57.7	49.77
Solyc05g052860.2.1	Tomato	cytosol	57.44	49.66
KRG97798	Soybean	cytosol	56.92	49.66
KRH15018	Soybean	cytosol	53.79	48.24
KRH73113	Soybean	cytosol	53.26	48.11
HORVU4Hr1G060590.5	Barley	mitochondrion	62.4	47.8
GSMUA_Achr3P02230_001	Banana	cytosol, plastid	34.2	42.67
AT3G55720.1	Thale cress	nucleus	48.56	42.47
Bra007185.1-P	Field mustard	cytosol, nucleus, plastid	48.04	42.4
CDY27272	Canola	cytosol, nucleus, plastid	48.04	42.4
Bra014725.1-P	Field mustard	nucleus	46.48	41.4
CDY02955	Canola	cytosol, nucleus, plastid	43.34	41.09
CDX76076	Canola	cytosol, nucleus, plastid	42.56	40.35
PGSC0003DMT400069768	Potato	cytosol	20.89	39.8
GSMUA_Achr10P...	Banana	cytosol	40.21	39.59
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	32.9	38.53
GSMUA_Achr9P25120_001	Banana	mitochondrion	33.42	37.98
GSMUA_Achr10P...	Banana	plastid	39.69	36.28
GSMUA_Achr7P00620_001	Banana	mitochondrion	38.12	35.87
GSMUA_Achr6P24020_001	Banana	cytosol	36.03	34.41
GSMUA_Achr2P21540_001	Banana	plastid	39.16	34.32
GSMUA_Achr6P16820_001	Banana	cytosol	39.43	34.24
GSMUA_Achr4P14230_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	40.73	34.06
GSMUA_Achr2P13470_001	Banana	cytosol	38.9	33.94
GSMUA_Achr3P29550_001	Banana	cytosol	31.33	33.71
GSMUA_Achr4P32590_001	Banana	cytosol	39.43	33.41
GSMUA_Achr7P26350_001	Banana	cytosol, mitochondrion, peroxisome, plastid	38.38	30.62

Protein Annotations

EnsemblPlants:GSMUA_Achr6P33890_001	EnsemblPlants:GSMUA_Achr6T33890_001	EnsemblPlantsGene:GSMUA_Achr6G33890_001	InterPro:DUF620	PANTHER:PTHR31300	PANTHER:PTHR31300:SF2
PFAM:PF04788	SEG:seg	UniParc:UPI000295ACDA	UniProt:M0TCI2	MapMan:27.4.5.3	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G33890_001]

Coordinates

chr6:+:32812853..32814527

Molecular Weight (calculated)

41871.9 Da

IEP (calculated)

7.536

GRAVY (calculated)

-0.344

Length

383 amino acids

Sequence
(BLAST)

001: MRKLWPNLDR EDGLDTVLEV PIPEETFLSD ASSRSNKTLC SNIKAWMRSH VDRSPPSPIG RGAELQLMLG VIGAPLVPLP VQAYRSTLVR GMEKDPIEVS
101: MAKYIVQQYI AASGGEQALN AINSMYAVGK VRMTASEFPK GHGGGGDTAS NNRKVRKGGG FDGAGEIGGF VLWQKKPHLW CLELMVSGCK FSAGSDGKVA
201: WRQTPWHQSH ASRGPPLPLR RSLQGLDPRC TANLFARSRT GLLLQLVDSR LLRIKYSASK GSVYWESTME SLIEDYRPID GVNIAHAGRT KVSLFRFGET
301: SDGHTRTRME ETWNVEEVDF NIWGLSTDCF LPPADLKEDE EGADVGDGPV ATAPPPSSVQ PAATRIGPSQ VAAVDPFMYP LTY

Best Arabidopsis Sequence Match ( AT5G05840.1 )
(BLAST)

001: MRKLCPNYNL EDGLETVLEV PMPEELFAAS KTKPGWNQMK SYWSKPTATA TGTATATNMT RLFGGRNAEI QLLLGVVGAP LIPLPVQPDH HNDYENPIHK
101: DIKDQPLEMS MAQYIVKQYI AAVGGDRALN AVESMYAMGK VRMTASEFCT GEGSLNSKMV KARSIKSGGG EVGGFVLWQK GIELWCLELV VSGCKISAGS
201: DAKVAWRQTP WHPSHASRGP PRPLRRFLQG LDPKSTANLF ARSVCMGEKK INDEDCFILK LDAEPSALKA RSSSNVEIIR HTVWGCFSQR TGLLIQLEDS
301: HLLRIKAQDD NSIFWETTME SLIQDYRTVD GILVAHAGKS SVSLFRFGEN SDNHSRTRME ETWEIEEMDF NIKGLSMDCF LPPSDLKKDD DEEEEIECGL
401: AANNEKLPMK IRSASLRISS SKVLAIVEEE DESEVTEET

Arabidopsis Description

Emb [Source:UniProtKB/TrEMBL;Acc:Q9FFJ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.