Factsheet for VIT_13s0019g03180.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400059652	Potato	cytosol	70.19	71.36
Solyc03g078650.2.1	Tomato	cytosol, nucleus, plastid	69.95	70.95
KRH15018	Soybean	cytosol	69.72	69.56
KRH31070	Soybean	cytosol	70.89	69.27
PGSC0003DMT400069765	Potato	cytosol	71.36	68.47
KRH73113	Soybean	cytosol	68.08	68.4
KRG97798	Soybean	cytosol	70.42	68.34
Solyc05g052860.2.1	Tomato	cytosol	70.42	67.72
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	59.86	67.28
PGSC0003DMT400069768	Potato	cytosol	31.46	66.67
CDX70123	Canola	cytosol	68.54	65.91
Bra009139.1-P	Field mustard	cytosol	68.54	65.77
AT5G05840.1	Thale cress	cytosol	67.61	65.6
CDX98870	Canola	cytosol	68.31	65.54
GSMUA_Achr5P28960_001	Banana	cytosol	65.02	63.53
GSMUA_Achr6P33890_001	Banana	cytosol	54.23	60.31
VIT_18s0001g12320.t01	Wine grape	cytosol	52.35	59.95
VIT_04s0023g01510.t01	Wine grape	cytosol	50.23	58.95
EER95119	Sorghum	cytosol	60.56	58.24
Os03t0267500-01	Rice	plasma membrane	60.09	58.05
TraesCS4A01G093200.1	Wheat	cytosol, nucleus, plastid	60.8	57.94
TraesCS4B01G211300.1	Wheat	cytosol, nucleus, plastid	60.56	57.85
TraesCS4D01G211900.1	Wheat	cytosol, nucleus, plastid	60.56	57.33
Zm00001d028565_P002	Maize	cytosol	61.03	56.52
Zm00001d047840_P001	Maize	cytosol, peroxisome, plastid	59.62	55.82
CDY27272	Canola	cytosol, nucleus, plastid	56.34	55.3
Bra007185.1-P	Field mustard	cytosol, nucleus, plastid	56.34	55.3
AT3G55720.1	Thale cress	nucleus	56.34	54.79
CDX76076	Canola	cytosol, nucleus, plastid	50.94	53.71
CDY02955	Canola	cytosol, nucleus, plastid	50.94	53.71
Bra014725.1-P	Field mustard	nucleus	53.99	53.49
HORVU4Hr1G060590.5	Barley	mitochondrion	60.09	51.2
VIT_19s0085g00900.t01	Wine grape	mitochondrion	36.85	40.46
VIT_03s0091g00410.t01	Wine grape	plastid	45.07	40.42
VIT_18s0001g09450.t01	Wine grape	plastid	44.37	40.3
VIT_08s0007g07110.t01	Wine grape	cytosol	34.74	22.42

Protein Annotations

ArrayExpress:VIT_13s0019g03180	EMBL:AM458555	EMBL:FN595998	EnsemblPlants:VIT_13s0019g03180.t01	EnsemblPlantsGene:VIT_13s0019g03180	EntrezGene:100263234
EntrezGene:LOC100263234	InterPro:DUF620	PANTHER:PTHR31300	PANTHER:PTHR31300:SF2	PFAM:PF04788	ProteinID:CAN65630
ProteinID:CAN65630.1	ProteinID:CBI31555	ProteinID:CBI31555.3	RefSeq:XP_002276362	RefSeq:XP_002276362.1	SEG:seg
UniParc:UPI00015CA243	UniProt:D7TMI8	wikigene:100263234	wikigene:LOC100263234	MapMan:27.4.5.3	:

Description

No Description!

Coordinates

chr13:-:4236678..4238981

Molecular Weight (calculated)

47333.3 Da

IEP (calculated)

5.987

GRAVY (calculated)

-0.336

Length

426 amino acids

Sequence
(BLAST)

001: MRKLCPNFDR EDGLDTVLEV PIPEEMFPSH KSTSLSWQNV KSWMKSNPER SATSIFGGRN TEIQLLLGVV GAPLIPLPVR CDRHPINQSI KDHPIEASMA
101: KYIVQQYIAA AGGETALNSI DSMYAMGKVR MVTSEFSAGE VCKNKAMKVK GVRHGGGEMG GFVLWQKRPE LWCLELVVSG CKISAGSDGV VAWRQTPWHH
201: SHASRGPPRP LRRALQGLDP RSTANLFSNS VCIGEKTINE EDCFILKLET ETSTLRARSS RNVEIMRHTV WGYFSQRTGL LVQLADTHLL RIKSSADDSI
301: FWETTMESLI QDYRTIDGVN IAHAGTTAVS LFRFGENSES HSRTRMEERW TIEEVDFNIK GLSTDCFLPP GDLKKVDEEG CDVVVGSNTK LPFKIPAASS
401: RVSAAKVVAI DVDDSYNIDD DDDDEL

Best Arabidopsis Sequence Match ( AT5G05840.1 )
(BLAST)

001: MRKLCPNYNL EDGLETVLEV PMPEELFAAS KTKPGWNQMK SYWSKPTATA TGTATATNMT RLFGGRNAEI QLLLGVVGAP LIPLPVQPDH HNDYENPIHK
101: DIKDQPLEMS MAQYIVKQYI AAVGGDRALN AVESMYAMGK VRMTASEFCT GEGSLNSKMV KARSIKSGGG EVGGFVLWQK GIELWCLELV VSGCKISAGS
201: DAKVAWRQTP WHPSHASRGP PRPLRRFLQG LDPKSTANLF ARSVCMGEKK INDEDCFILK LDAEPSALKA RSSSNVEIIR HTVWGCFSQR TGLLIQLEDS
301: HLLRIKAQDD NSIFWETTME SLIQDYRTVD GILVAHAGKS SVSLFRFGEN SDNHSRTRME ETWEIEEMDF NIKGLSMDCF LPPSDLKKDD DEEEEIECGL
401: AANNEKLPMK IRSASLRISS SKVLAIVEEE DESEVTEET

Arabidopsis Description

Emb [Source:UniProtKB/TrEMBL;Acc:Q9FFJ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.