Factsheet for VIT_08s0007g07110.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96347	Soybean	cytosol	41.06	76.77
PGSC0003DMT400066079	Potato	cytosol	40.76	76.42
KRH71794	Soybean	cytosol	41.67	75.97
Solyc03g051920.2.1	Tomato	cytosol	40.45	75.64
KRH68081	Soybean	cytosol	40.76	75.35
KRH38019	Soybean	peroxisome	40.0	73.13
CDX81011	Canola	cytosol	34.09	61.14
CDY55767	Canola	cytosol	34.09	61.14
Bra005901.1-P	Field mustard	cytosol	33.94	60.87
AT5G06610.1	Thale cress	cytosol	33.03	59.24
GSMUA_Achr3P29550_001	Banana	cytosol	31.52	58.43
TraesCS4B01G282900.1	Wheat	cytosol	28.03	50.68
TraesCS4D01G281900.1	Wheat	cytosol	28.03	50.68
TraesCS4A01G020600.1	Wheat	cytosol	28.03	50.41
Zm00001d027816_P001	Maize	cytosol	27.27	49.86
Os03t0167400-00	Rice	cytosol	27.58	49.73
EER95445	Sorghum	cytosol	27.42	49.32
VIT_19s0085g00900.t01	Wine grape	mitochondrion	25.76	43.81
Os10t0411100-00	Rice	cytosol, peroxisome, plasma membrane	26.36	38.84
VIT_18s0001g09450.t01	Wine grape	plastid	26.82	37.74
VIT_03s0091g00410.t01	Wine grape	plastid	26.21	36.42
VIT_04s0023g01510.t01	Wine grape	cytosol	19.7	35.81
VIT_13s0019g03180.t01	Wine grape	cytosol	22.42	34.74
VIT_18s0001g12320.t01	Wine grape	cytosol	19.24	34.14

Protein Annotations

EntrezGene:100267482	wikigene:100267482	EntrezGene:100267519	wikigene:100267519	MapMan:12.3.3.5	Gene3D:2.170.270.10
MapMan:27.4.5.3	Gene3D:3.30.60.180	Gene3D:3.30.70.3410	ProteinID:CBI29967	ProteinID:CBI29967.3	UniProt:D7TI91
InterPro:DUF620	EMBL:FN595991	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001214
EntrezGene:LOC100267482	wikigene:LOC100267482	EntrezGene:LOC100267519	wikigene:LOC100267519	PFAM:PF00856	PFAM:PF04788
PFscan:PS50280	PANTHER:PTHR31300	PANTHER:PTHR31300:SF3	InterPro:SET_dom	SMART:SM00317	SUPFAM:SSF82199
UniParc:UPI0001BE356D	ArrayExpress:VIT_08s0007g07110	EnsemblPlantsGene:VIT_08s0007g07110	EnsemblPlants:VIT_08s0007g07110.t01	RefSeq:XP_002276611	RefSeq:XP_002276611.1
RefSeq:XP_002281244	RefSeq:XP_002281244.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr8:-:20728204..20735078

Molecular Weight (calculated)

73116.4 Da

IEP (calculated)

6.505

GRAVY (calculated)

-0.179

Length

660 amino acids

Sequence
(BLAST)

001: MNRLAPLSEE PTNDEEEDNN NSSKKVSSWR NWLKSHFSLL FNKKSDLKIL LSVLGCPLFP ISPHAGQPNT HVSSSAEYII QHFTAATGCR KLEGKVKNVF
101: ATGKVRMAMV DELGSSGSST AVGPTGVSQK GCFVMWQMVP DKWLIELVVG GHKVVAGSDG NVAWRHTPWI GAHAAKGGVR PLRRVLQGLD PLAVSAVFSS
201: AQYMGEKRIM GVDCFVLKLS ADHTDLADRS DNTAEMIKHV IFGYFSQRSG LLVYLEDSYL TRIQSPGSRP TYWETTMATK IEDYRTVEGV MIAHGGQSSA
301: IITRFGDNLK VGPAITRMEE TWTIDDLAFN VPGLSMDCFI PPEEVQKDYP EENLDWRSPL HRTPTPPENE KLASPGPPPI RVSITEMAGR GVFATRRIGS
401: GDLIHTAKPL VSHPSLSSIH SVCYFCLRKL KPVTSSEDCN VRFCSQECEE QSKVFVAVER KADWSAYDDY CRTRGLKYPL LVKRLACMVV SGVASADCLD
501: ILQPASLSSE MISEMGEGFS LLQSAFMKAK ARDECMAFLT EQWYINVLAR FRINSFRIEL AGGSYEDLHS LAAASVETEA AVGNAVYMLP SFYNHDCDPN
601: VHIIWIDNVN ARLKALREIE AGEELRICYI DASMDHDARQ TILFQGFGFR CSCLRCSSGD

Best Arabidopsis Sequence Match ( AT5G06610.1 )
(BLAST)

001: MQRLAPLMEE PIDEEDQEEE RGGRKGSTRS KSWKKWIKTQ LQFIVFPKKP DMKLLLSVMG CPLFPVPPLS KISLQQVSSS AQYIIQQFAA ATGCKKLAGE
101: IKNTFVTGKI TMTMVSDINS STAVSSASSV SHKGCFVMWQ MLPEKWLIEL VGGGHKVSAG SDGEITWRYT PWLGDHAAKG AIRPLRRALQ GLDPLTISSV
201: FSSAQFVGEK EINGKDCFIL KLSTDQIDLS KRSDSTAEMI KHVAFGYFSQ KSGLLICLED SSLTRIQIPG TVPTYWETSM SSWMEDYRAI EGSEVVIAHS
301: GKTDVLISRF GETLKGGISV TRMEEKWTID DVAFDVPGLS VDCFIPPKEM KMDFHHQDAQ KHLPNYNT

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9FG09]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.