Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra005901.1-P | Field mustard | cytosol | 99.46 | 99.46 |
| CDY55767 | Canola | cytosol | 99.46 | 99.46 |
| AT5G06610.1 | Thale cress | cytosol | 84.78 | 84.78 |
| KRG96347 | Soybean | cytosol | 60.33 | 62.89 |
| KRH68081 | Soybean | cytosol | 60.05 | 61.9 |
| KRH71794 | Soybean | cytosol | 60.87 | 61.88 |
| KRH38019 | Soybean | peroxisome | 59.78 | 60.94 |
| PGSC0003DMT400066079 | Potato | cytosol | 57.61 | 60.23 |
| Solyc03g051920.2.1 | Tomato | cytosol | 57.34 | 59.77 |
| GSMUA_Achr3P29550_001 | Banana | cytosol | 50.82 | 52.53 |
| TraesCS4D01G281900.1 | Wheat | cytosol | 46.2 | 46.58 |
| Zm00001d027816_P001 | Maize | cytosol | 45.65 | 46.54 |
| TraesCS4A01G020600.1 | Wheat | cytosol | 46.2 | 46.32 |
| TraesCS4B01G282900.1 | Wheat | cytosol | 45.92 | 46.3 |
| EER95445 | Sorghum | cytosol | 45.92 | 46.05 |
| Os03t0167400-00 | Rice | cytosol | 44.84 | 45.08 |
| CDY03939 | Canola | cytosol | 13.32 | 41.53 |
| CDX87382 | Canola | mitochondrion | 44.29 | 39.09 |
| CDX88540 | Canola | mitochondrion | 44.29 | 39.09 |
| CDX95439 | Canola | mitochondrion | 44.57 | 37.7 |
| CDY50147 | Canola | mitochondrion | 44.84 | 37.59 |
| CDY68684 | Canola | cytosol, mitochondrion | 29.08 | 37.41 |
| Os10t0411100-00 | Rice | cytosol, peroxisome, plasma membrane | 44.29 | 36.38 |
| CDX79318 | Canola | cytosol | 8.42 | 36.05 |
| CDY67693 | Canola | mitochondrion | 44.02 | 35.68 |
| CDY46168 | Canola | mitochondrion | 44.02 | 35.53 |
| CDY30758 | Canola | cytosol | 34.78 | 34.69 |
| CDY53851 | Canola | cytosol | 34.78 | 34.69 |
| CDY16530 | Canola | plastid | 42.12 | 34.29 |
| VIT_08s0007g07110.t01 | Wine grape | cytosol | 61.14 | 34.09 |
| CDY52160 | Canola | cytosol | 33.42 | 33.33 |
| CDY49838 | Canola | cytosol | 33.42 | 33.33 |
| CDY32838 | Canola | plastid | 40.76 | 32.97 |
| CDX70123 | Canola | cytosol | 37.77 | 31.38 |
| CDX98870 | Canola | cytosol | 37.77 | 31.31 |
| CDX68146 | Canola | cytosol | 32.07 | 31.22 |
| CDY67976 | Canola | mitochondrion, plastid | 42.93 | 31.16 |
| CDX90103 | Canola | mitochondrion, plastid | 42.93 | 31.16 |
| CDY46011 | Canola | cytosol | 32.34 | 30.05 |
| CDY37259 | Canola | cytosol | 32.34 | 30.05 |
| CDY27272 | Canola | cytosol, nucleus, plastid | 32.88 | 27.88 |
| CDX76076 | Canola | cytosol, nucleus, plastid | 29.08 | 26.49 |
| CDY02955 | Canola | cytosol, nucleus, plastid | 28.8 | 26.24 |
Protein Annotations
| EnsemblPlants:CDX81011 | EnsemblPlantsGene:GSBRNA2T00134443001 | InterPro:DUF620 | PANTHER:PTHR31300 | PANTHER:PTHR31300:SF3 | PFAM:PF04788 |
| ProteinID:CDX81011 | ProteinID:CDX81011.1 | UniParc:UPI0004EBE9DF | MapMan:27.4.5.3 | : | : |
Description
BnaC03g02650D
Coordinates
chrLK031823:+:1262280..1265736
Molecular Weight (calculated)
41161.7 Da
IEP (calculated)
7.561
GRAVY (calculated)
-0.284
Length
368 amino acids
Sequence
(BLAST)
(BLAST)
001: MQRLAPLMEE PMDQEEQERG GRSIRTKSWK KWIKTQLQSM IIHKKPDAKV LLSVLGCPLF PVPPLSKMSL QQVSSSAQYI IQHFAAATGC KKLERGIKNT
101: FVTGKITMTM MNDLSGSATV NASPVSHKGC FVMWQMLPEK WLIELVGGGH KISAGSDGEI AWRYTPWLGD HAAKGAIRPL RRTLQGLDPL TISSVFSSAQ
201: FVGEKEINGK DCFVLKLSTD QTDLTRRSDS TAEMIKHVAF GYFSQKSGLL LCLEDSSLTR IQTPGSLPTY WETSMSSWME DYRAIEGSEV VIAHSGRTDV
301: LISRFGETLK GGISVTRMEE RWTIDDVAFD VPGLSIDCFI PPKEMKMDFH HQDGPNTFPE LLDERQKL
101: FVTGKITMTM MNDLSGSATV NASPVSHKGC FVMWQMLPEK WLIELVGGGH KISAGSDGEI AWRYTPWLGD HAAKGAIRPL RRTLQGLDPL TISSVFSSAQ
201: FVGEKEINGK DCFVLKLSTD QTDLTRRSDS TAEMIKHVAF GYFSQKSGLL LCLEDSSLTR IQTPGSLPTY WETSMSSWME DYRAIEGSEV VIAHSGRTDV
301: LISRFGETLK GGISVTRMEE RWTIDDVAFD VPGLSIDCFI PPKEMKMDFH HQDGPNTFPE LLDERQKL
001: MQRLAPLMEE PIDEEDQEEE RGGRKGSTRS KSWKKWIKTQ LQFIVFPKKP DMKLLLSVMG CPLFPVPPLS KISLQQVSSS AQYIIQQFAA ATGCKKLAGE
101: IKNTFVTGKI TMTMVSDINS STAVSSASSV SHKGCFVMWQ MLPEKWLIEL VGGGHKVSAG SDGEITWRYT PWLGDHAAKG AIRPLRRALQ GLDPLTISSV
201: FSSAQFVGEK EINGKDCFIL KLSTDQIDLS KRSDSTAEMI KHVAFGYFSQ KSGLLICLED SSLTRIQIPG TVPTYWETSM SSWMEDYRAI EGSEVVIAHS
301: GKTDVLISRF GETLKGGISV TRMEEKWTID DVAFDVPGLS VDCFIPPKEM KMDFHHQDAQ KHLPNYNT
101: IKNTFVTGKI TMTMVSDINS STAVSSASSV SHKGCFVMWQ MLPEKWLIEL VGGGHKVSAG SDGEITWRYT PWLGDHAAKG AIRPLRRALQ GLDPLTISSV
201: FSSAQFVGEK EINGKDCFIL KLSTDQIDLS KRSDSTAEMI KHVAFGYFSQ KSGLLICLED SSLTRIQIPG TVPTYWETSM SSWMEDYRAI EGSEVVIAHS
301: GKTDVLISRF GETLKGGISV TRMEEKWTID DVAFDVPGLS VDCFIPPKEM KMDFHHQDAQ KHLPNYNT
Arabidopsis Description
Gb [Source:UniProtKB/TrEMBL;Acc:Q9FG09]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.