CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
mitochondrion 4
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68146	Canola	cytosol	97.55	73.81
CDY46011	Canola	cytosol	94.41	68.18
CDY37259	Canola	cytosol	94.41	68.18
AT1G75160.1	Thale cress	cytosol	92.31	66.84
PGSC0003DMT400036213	Potato	cytosol	52.8	59.45
Zm00001d043364_P001	Maize	mitochondrion	23.08	54.55
VIT_18s0001g12320.t01	Wine grape	cytosol	69.23	53.23
KRH05801	Soybean	cytosol	65.73	48.83
KRH51867	Soybean	cytosol	64.69	48.43
KRH50361	Soybean	cytosol	64.34	48.17
Solyc07g022840.1.1	Tomato	cytosol	59.79	45.84
CDY53851	Canola	cytosol	58.74	45.53
CDY30758	Canola	cytosol	58.39	45.26
CDY52160	Canola	cytosol	57.69	44.72
CDY49838	Canola	cytosol	57.69	44.72
PGSC0003DMT400013218	Potato	cytosol	60.49	44.7
Solyc04g080220.2.1	Tomato	cytosol	60.14	44.44
GSMUA_Achr2P13560_001	Banana	cytosol	56.29	42.71
GSMUA_Achr4P27870_001	Banana	cytosol	56.64	42.63
Zm00001d012676_P001	Maize	cytosol	56.29	42.15
TraesCS3B01G333900.1	Wheat	cytosol	56.64	42.08
TraesCS3D01G299300.1	Wheat	cytosol	56.29	41.93
TraesCS3A01G302500.1	Wheat	cytosol	56.29	41.93
OQU89854	Sorghum	cytosol	56.29	41.93
EES03659	Sorghum	cytosol	55.59	41.41
HORVU3Hr1G073950.2	Barley	plastid	55.59	36.81
CDX70123	Canola	cytosol	55.94	36.12
CDX98870	Canola	cytosol	55.94	36.04
CDY27272	Canola	cytosol, nucleus, plastid	50.0	32.95
CDX79318	Canola	cytosol	9.79	32.56
CDX76076	Canola	cytosol, nucleus, plastid	44.06	31.19
CDY02955	Canola	cytosol, nucleus, plastid	44.06	31.19
CDX95439	Canola	mitochondrion	45.45	29.89
CDY03939	Canola	cytosol	12.24	29.66
CDY50147	Canola	mitochondrion	45.45	29.61
CDX88540	Canola	mitochondrion	42.66	29.26
CDX87382	Canola	mitochondrion	42.66	29.26
CDY55767	Canola	cytosol	37.41	29.08
CDX81011	Canola	cytosol	37.41	29.08
CDY67693	Canola	mitochondrion	44.76	28.19
CDY16530	Canola	plastid	44.41	28.1
CDY46168	Canola	mitochondrion	44.41	27.85
CDY32838	Canola	plastid	43.71	27.47
CDY67976	Canola	mitochondrion, plastid	41.26	23.27
CDX90103	Canola	mitochondrion, plastid	41.26	23.27

Protein Annotations

EnsemblPlants:CDY68684	EnsemblPlantsGene:GSBRNA2T00077062001	InterPro:DUF620	PANTHER:PTHR31300	PANTHER:PTHR31300:SF4	PFAM:PF04788
ProteinID:CDY68684	ProteinID:CDY68684.1	SEG:seg	UniParc:UPI0004EE616D	UniProt:A0A078JPG4	MapMan:27.4.5.3

Description

BnaCnng60070DBnaCnng60070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JPG4]

Coordinates

chrLK037799:-:561..2076

Molecular Weight (calculated)

31664.8 Da

IEP (calculated)

8.054

GRAVY (calculated)

-0.247

Length

286 amino acids

Sequence
(BLAST)

001: MKKKLEASTA KYIVQQYVAA CGGPAALNAV KSMYAVGQVR MQGSGMVAGE DEGITATPVR LGKGNFEVGG FVLWQKNPNL WFLELVVSGF KISAGSDGKV
101: AWNQSSTQPS QAHRGPPRPL RRFFQGLDPR CTASLFLDAA CIGEQTINGE DCFVLKVETP ADILKAQCSA NTEVIHHTVW GYFSQRTGLL VKFGDTKLVR
201: VRSARGKNDG VFWETSMESI IDDYMYVDSV NIAHSGRTLT TLYRYGGAVN HRRRIEEKWR IEEVDFNICG LCLESFLPPS DMNNDH

Best Arabidopsis Sequence Match ( AT1G75160.1 )
(BLAST)

001: MKMRKLCPNL DREDGLETVL EVPVPEEMFT KMGSNAQGRW RNMHALMKAH AVVTAVATDV RTPASSSSMS NVNMHLQSKS DNEFVALLKI VGSPLIPFHV
101: PLEFCLSRPI NDTSIEASTA KYIVQQYVAA CGGPTALNAV KSMYAVGQVR MQGSEMVAGE DEGTGTPVRL GKGSFEVGGF VLWQKNPNLW FLELVVSGFK
201: ISAGSDGKVA WNQSSTQPSQ AHRGPPRPLR RFFQGLDPRC TASLFLDAVC IGEQPVNGED CFVLKVETPS DILKAQCSPN TEVIHHTVWG YFSQRTGLLV
301: KFGDTKLVRV KSGRGKNDGV FWETSMESII DDYIFVDAVN IAHGGQTVTT LYRYGGAVNH RRRIEEKWRI EEVDFNICGL CLESFLPPSD INNDH

Arabidopsis Description

Protein of unknown function (DUF620) [Source:TAIR;Acc:AT1G75160]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.