CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68684	Canola	cytosol, mitochondrion	73.81	97.55
Bra003768.1-P	Field mustard	cytosol	99.74	95.2
CDY46011	Canola	cytosol	95.77	91.41
CDY37259	Canola	cytosol	95.77	91.41
AT1G75160.1	Thale cress	cytosol	93.39	89.37
VIT_18s0001g12320.t01	Wine grape	cytosol	65.08	66.13
KRH05801	Soybean	cytosol	61.9	60.78
KRH51867	Soybean	cytosol	60.58	59.95
KRH50361	Soybean	cytosol	60.32	59.69
PGSC0003DMT400036213	Potato	cytosol	39.42	58.66
CDY53851	Canola	cytosol	55.29	56.64
CDY30758	Canola	cytosol	55.03	56.37
PGSC0003DMT400013218	Potato	cytosol	57.14	55.81
Zm00001d043364_P001	Maize	mitochondrion	17.72	55.37
Solyc04g080220.2.1	Tomato	cytosol	56.61	55.3
CDY49838	Canola	cytosol	53.97	55.28
CDY52160	Canola	cytosol	53.97	55.28
Solyc07g022840.1.1	Tomato	cytosol	54.23	54.96
GSMUA_Achr4P27870_001	Banana	cytosol	55.03	54.74
GSMUA_Achr2P13560_001	Banana	cytosol	54.5	54.64
Zm00001d012676_P001	Maize	cytosol	53.17	52.62
TraesCS3B01G333900.1	Wheat	cytosol	53.44	52.47
TraesCS3D01G299300.1	Wheat	cytosol	53.17	52.34
TraesCS3A01G302500.1	Wheat	cytosol	53.17	52.34
OQU89854	Sorghum	cytosol	53.17	52.34
EES03659	Sorghum	cytosol	52.65	51.82
HORVU3Hr1G073950.2	Barley	plastid	52.38	45.83
CDX70123	Canola	cytosol	50.53	43.12
CDX98870	Canola	cytosol	50.53	43.02
CDY27272	Canola	cytosol, nucleus, plastid	47.88	41.71
CDY02955	Canola	cytosol, nucleus, plastid	43.39	40.59
CDX76076	Canola	cytosol, nucleus, plastid	43.12	40.35
CDY50147	Canola	mitochondrion	40.48	34.85
CDX95439	Canola	mitochondrion	39.95	34.71
CDX88540	Canola	mitochondrion	36.24	32.85
CDX87382	Canola	mitochondrion	36.24	32.85
CDX79318	Canola	cytosol	7.41	32.56
CDY67693	Canola	mitochondrion	38.62	32.16
CDX81011	Canola	cytosol	31.22	32.07
CDY55767	Canola	cytosol	31.22	32.07
CDY46168	Canola	mitochondrion	38.62	32.02
CDY16530	Canola	plastid	37.04	30.97
CDY32838	Canola	plastid	37.04	30.77
CDY03939	Canola	cytosol	9.26	29.66
CDX90103	Canola	mitochondrion, plastid	35.98	26.82
CDY67976	Canola	mitochondrion, plastid	35.98	26.82

Protein Annotations

EnsemblPlants:CDX68146	EnsemblPlantsGene:GSBRNA2T00099398001	InterPro:DUF620	PANTHER:PTHR31300	PANTHER:PTHR31300:SF4	PFAM:PF04788
ProteinID:CDX68146	ProteinID:CDX68146.1	SEG:seg	UniParc:UPI0004EF34A2	MapMan:27.4.5.3	:

Description

BnaA07g21860D

Coordinates

chrLK031787:-:4144543..4146861

Molecular Weight (calculated)

41658.1 Da

IEP (calculated)

7.448

GRAVY (calculated)

-0.165

Length

378 amino acids

Sequence
(BLAST)

001: MKMRKLCPNL DDEDGLETVL EVPVPEEMFT KMGSNATGRW RNMHALMKAH AVVTAVAADM RTPASSSSMS NIVGSPLIPF HVPLEFCLSR PINVPSIEAS
101: TAKYIVQQYV AACGGPAALN AVKSMYAVGQ VRMQGSGMVA GEDEGITATP VRLGKGNFEV GGFVLWQKNP NLWFLELVVS GFKISAGSDG KVAWNQSSTQ
201: PSQAHRGPPR PLRRFFQGLD PRCTASLFLD AVCIGEQTIN GEDCFVLKVE TPADILKAKC SANTEVIHHT VWGYFSQRTG LLVKFGDTKL VRVRSARGKN
301: DGVFWETSME SIIDDYMYVD SVNIAHGGRT LTTLYRYGGA VNHRRRIEEK WRIEEVDFNI CGLCLESFLP PSDMNNDR

Best Arabidopsis Sequence Match ( AT1G75160.1 )
(BLAST)

001: MKMRKLCPNL DREDGLETVL EVPVPEEMFT KMGSNAQGRW RNMHALMKAH AVVTAVATDV RTPASSSSMS NVNMHLQSKS DNEFVALLKI VGSPLIPFHV
101: PLEFCLSRPI NDTSIEASTA KYIVQQYVAA CGGPTALNAV KSMYAVGQVR MQGSEMVAGE DEGTGTPVRL GKGSFEVGGF VLWQKNPNLW FLELVVSGFK
201: ISAGSDGKVA WNQSSTQPSQ AHRGPPRPLR RFFQGLDPRC TASLFLDAVC IGEQPVNGED CFVLKVETPS DILKAQCSPN TEVIHHTVWG YFSQRTGLLV
301: KFGDTKLVRV KSGRGKNDGV FWETSMESII DDYIFVDAVN IAHGGQTVTT LYRYGGAVNH RRRIEEKWRI EEVDFNICGL CLESFLPPSD INNDH

Arabidopsis Description

Protein of unknown function (DUF620) [Source:TAIR;Acc:AT1G75160]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.