Factsheet for Solyc04g080220.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400013218	Potato	cytosol	96.38	96.38
Solyc07g022840.1.1	Tomato	cytosol	66.67	69.17
VIT_18s0001g12320.t01	Wine grape	cytosol	58.4	60.75
CDY68684	Canola	cytosol, mitochondrion	44.44	60.14
KRH50361	Soybean	cytosol	58.66	59.42
KRH51867	Soybean	cytosol	57.88	58.64
CDX68146	Canola	cytosol	55.3	56.61
KRH05801	Soybean	cytosol	55.56	55.84
Bra003768.1-P	Field mustard	cytosol	56.85	55.56
Bra008179.1-P	Field mustard	cytosol	56.59	55.3
CDY46011	Canola	cytosol	56.33	55.05
CDY37259	Canola	cytosol	56.33	55.05
AT1G75160.1	Thale cress	cytosol	55.81	54.68
GSMUA_Achr2P13560_001	Banana	cytosol	52.97	54.38
GSMUA_Achr4P27870_001	Banana	cytosol	52.97	53.95
Solyc02g085490.1.1	Tomato	cytosol, nucleus, peroxisome	51.42	53.35
TraesCS3A01G302500.1	Wheat	cytosol	49.1	49.48
Zm00001d012676_P001	Maize	cytosol	48.84	49.48
EES03659	Sorghum	cytosol	48.84	49.22
TraesCS3B01G333900.1	Wheat	cytosol	48.84	49.09
OQU89854	Sorghum	cytosol	48.58	48.96
TraesCS3D01G299300.1	Wheat	cytosol	48.58	48.96
Zm00001d043364_P001	Maize	mitochondrion	15.25	48.76
Solyc03g078650.2.1	Tomato	cytosol, nucleus, plastid	49.35	45.48
HORVU3Hr1G073950.2	Barley	plastid	49.1	43.98
Solyc05g052860.2.1	Tomato	cytosol	49.1	42.89
Solyc03g051920.2.1	Tomato	cytosol	33.33	36.54
Solyc01g107350.2.1	Tomato	plastid	39.79	32.77
Solyc04g078190.2.1	Tomato	nucleus, plastid	20.41	26.96

Protein Annotations

EnsemblPlants:Solyc04g080220.2.1	EnsemblPlantsGene:Solyc04g080220.2	InterPro:DUF620	PANTHER:PTHR31300	PANTHER:PTHR31300:SF4	PFAM:PF04788
UniParc:UPI0002765667	UniProt:K4BVA1	MapMan:27.4.5.3	:	:	:

Description

No Description!

Coordinates

chr4:+:64466898..64469810

Molecular Weight (calculated)

43332.5 Da

IEP (calculated)

7.390

GRAVY (calculated)

-0.403

Length

387 amino acids

Sequence
(BLAST)

001: MRKLSPNLDK EDGLDTVLEV PLPEEMFSKT DGSSAAIRWK KMLNLIRADK LPNRSKAVSS GNNDQFMFLL KIVGSALIPF QVQLDHAINL PVRDGCIKAS
101: SAKYIVQQYL AASGGQAALN SINSMYAVGQ LQMAMSDIQQ SGNQMNSKRT CEDGGFVLWQ KNPDLWFLEF VVSDCKVSAG SNGTVAWSHS STNSNASKGP
201: PRPLRRFFQG LDPRSTANLF LNAVCIGEKK IKDEGCFMLK LETSKDMLKA QSTANTEVVH HTIWGYFSQR SGVLIQFEDT KLVRLKSAKD NNDSTFWETS
301: MESTLKDYRY IEGINIAHCG RTAATIYRYG KNLDYRAKVE ETWKIEEIDF NISGLSMDCF LPPADVINKE NEQEWDSRAS LAENRTV

Best Arabidopsis Sequence Match ( AT1G75160.1 )
(BLAST)

001: MKMRKLCPNL DREDGLETVL EVPVPEEMFT KMGSNAQGRW RNMHALMKAH AVVTAVATDV RTPASSSSMS NVNMHLQSKS DNEFVALLKI VGSPLIPFHV
101: PLEFCLSRPI NDTSIEASTA KYIVQQYVAA CGGPTALNAV KSMYAVGQVR MQGSEMVAGE DEGTGTPVRL GKGSFEVGGF VLWQKNPNLW FLELVVSGFK
201: ISAGSDGKVA WNQSSTQPSQ AHRGPPRPLR RFFQGLDPRC TASLFLDAVC IGEQPVNGED CFVLKVETPS DILKAQCSPN TEVIHHTVWG YFSQRTGLLV
301: KFGDTKLVRV KSGRGKNDGV FWETSMESII DDYIFVDAVN IAHGGQTVTT LYRYGGAVNH RRRIEEKWRI EEVDFNICGL CLESFLPPSD INNDH

Arabidopsis Description

Protein of unknown function (DUF620) [Source:TAIR;Acc:AT1G75160]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.