Factsheet for VIT_18s0001g12320.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68684	Canola	cytosol, mitochondrion	53.23	69.23
KRH51867	Soybean	cytosol	68.01	66.23
KRH50361	Soybean	cytosol	68.01	66.23
KRH05801	Soybean	cytosol	68.28	65.97
CDX68146	Canola	cytosol	66.13	65.08
VIT_04s0023g01510.t01	Wine grape	cytosol	63.17	64.74
Bra008179.1-P	Field mustard	cytosol	68.82	64.65
PGSC0003DMT400036213	Potato	cytosol	44.09	64.57
CDY37259	Canola	cytosol	68.55	64.39
CDY46011	Canola	cytosol	68.55	64.39
Bra003768.1-P	Field mustard	cytosol	67.74	63.64
AT1G75160.1	Thale cress	cytosol	67.2	63.29
GSMUA_Achr4P27870_001	Banana	cytosol	64.25	62.89
Solyc07g022840.1.1	Tomato	cytosol	61.56	61.39
GSMUA_Achr2P13560_001	Banana	cytosol	61.56	60.74
Zm00001d012676_P001	Maize	cytosol	61.02	59.42
TraesCS3B01G333900.1	Wheat	cytosol	61.02	58.96
PGSC0003DMT400013218	Potato	cytosol	61.29	58.91
TraesCS3A01G302500.1	Wheat	cytosol	60.75	58.85
OQU89854	Sorghum	cytosol	60.75	58.85
TraesCS3D01G299300.1	Wheat	cytosol	60.75	58.85
EES03659	Sorghum	cytosol	60.75	58.85
Zm00001d043364_P001	Maize	mitochondrion	19.09	58.68
Solyc04g080220.2.1	Tomato	cytosol	60.75	58.4
VIT_13s0019g03180.t01	Wine grape	cytosol	59.95	52.35
HORVU3Hr1G073950.2	Barley	plastid	59.95	51.62
VIT_19s0085g00900.t01	Wine grape	mitochondrion	37.63	36.08
VIT_03s0091g00410.t01	Wine grape	plastid	44.35	34.74
VIT_18s0001g09450.t01	Wine grape	plastid	43.01	34.12
VIT_08s0007g07110.t01	Wine grape	cytosol	34.14	19.24

Protein Annotations

ArrayExpress:VIT_18s0001g12320	EMBL:FN595227	EnsemblPlants:VIT_18s0001g12320.t01	EnsemblPlantsGene:VIT_18s0001g12320	EntrezGene:100257372	EntrezGene:LOC100257372
InterPro:DUF620	PANTHER:PTHR31300	PANTHER:PTHR31300:SF4	PFAM:PF04788	ProteinID:CCB45938	ProteinID:CCB45938.1
RefSeq:XP_002281510	RefSeq:XP_002281510.1	UniParc:UPI00015C7F5F	UniProt:F6H1H9	wikigene:100257372	wikigene:LOC100257372
MapMan:27.4.5.3	:	:	:	:	:

Description

No Description!

Coordinates

chr18:+:10519651..10520983

Molecular Weight (calculated)

41435.7 Da

IEP (calculated)

6.008

GRAVY (calculated)

-0.251

Length

372 amino acids

Sequence
(BLAST)

001: MRKLCPNFDK ENGLETVLEV PIPEEMFKSM GSNVALRWQN MRAFMKGQCI DKASRLSDGC GPEFRLLLKL VGSPLIPVQV PLEYGATFPI KDCSIEASTA
101: KYIVQQYIAA TGGWAALNAV HSMYAVGQVR MISSDMSEGE ERVDPKGNGE VGGFVLWQKN PDLWYLELVV SGCKVSAGSD GKVAWGQTSS QASHANRGPP
201: RPLRRFFQGL DPRFTANLFL DAVCIGEKTI NNEDCFILKM ETSASVLKGQ STPKTEIVHH TVWGYFSMRT GLLIQFEDTK LVRMKAVKGE ESVFWETSLE
301: SVIEDYRYVD GINIAHGGKT TATLYRYGEA SNHKRRIEET WGIEEIDFNI CGLTMESFLP PADLKIYQDG GK

Best Arabidopsis Sequence Match ( AT1G75160.1 )
(BLAST)

001: MKMRKLCPNL DREDGLETVL EVPVPEEMFT KMGSNAQGRW RNMHALMKAH AVVTAVATDV RTPASSSSMS NVNMHLQSKS DNEFVALLKI VGSPLIPFHV
101: PLEFCLSRPI NDTSIEASTA KYIVQQYVAA CGGPTALNAV KSMYAVGQVR MQGSEMVAGE DEGTGTPVRL GKGSFEVGGF VLWQKNPNLW FLELVVSGFK
201: ISAGSDGKVA WNQSSTQPSQ AHRGPPRPLR RFFQGLDPRC TASLFLDAVC IGEQPVNGED CFVLKVETPS DILKAQCSPN TEVIHHTVWG YFSQRTGLLV
301: KFGDTKLVRV KSGRGKNDGV FWETSMESII DDYIFVDAVN IAHGGQTVTT LYRYGGAVNH RRRIEEKWRI EEVDFNICGL CLESFLPPSD INNDH

Arabidopsis Description

Protein of unknown function (DUF620) [Source:TAIR;Acc:AT1G75160]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.