Factsheet for PGSC0003DMT400036213

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g022840.1.1	Tomato	cytosol	91.34	62.2
Zm00001d043364_P001	Maize	mitochondrion	25.2	52.89
CDY68684	Canola	cytosol, mitochondrion	59.45	52.8
PGSC0003DMT400013218	Potato	cytosol	76.38	50.13
VIT_18s0001g12320.t01	Wine grape	cytosol	64.57	44.09
PGSC0003DMT400069768	Potato	cytosol	33.07	41.79
KRH50361	Soybean	cytosol	62.6	41.62
KRH51867	Soybean	cytosol	62.6	41.62
KRH05801	Soybean	cytosol	62.2	41.04
CDX68146	Canola	cytosol	58.66	39.42
GSMUA_Achr4P27870_001	Banana	cytosol	57.48	38.42
CDY46011	Canola	cytosol	59.06	37.88
Bra003768.1-P	Field mustard	cytosol	59.06	37.88
Bra008179.1-P	Field mustard	cytosol	59.06	37.88
CDY37259	Canola	cytosol	59.06	37.88
GSMUA_Achr2P13560_001	Banana	cytosol	55.91	37.67
AT1G75160.1	Thale cress	cytosol	58.27	37.47
PGSC0003DMT400038589	Potato	cytosol, nucleus, peroxisome	54.72	37.27
TraesCS3A01G302500.1	Wheat	cytosol	55.51	36.72
TraesCS3D01G299300.1	Wheat	cytosol	55.12	36.46
TraesCS3B01G333900.1	Wheat	cytosol	55.12	36.36
Zm00001d012676_P001	Maize	cytosol	54.33	36.13
EES03659	Sorghum	cytosol	53.94	35.68
OQU89854	Sorghum	cytosol	53.54	35.42
PGSC0003DMT400059652	Potato	cytosol	53.94	32.7
HORVU3Hr1G073950.2	Barley	plastid	54.72	32.18
PGSC0003DMT400069765	Potato	cytosol	54.33	31.08
PGSC0003DMT400066079	Potato	cytosol	40.16	28.98
PGSC0003DMT400066530	Potato	plastid	46.46	25.11
PGSC0003DMT400055468	Potato	plastid	45.67	24.68

Protein Annotations

EnsemblPlants:PGSC0003DMT400036213	EnsemblPlantsGene:PGSC0003DMG400013939	InterPro:DUF620	PANTHER:PTHR31300	PANTHER:PTHR31300:SF4	PFAM:PF04788
PGSC:PGSC0003DMG400013939	SEG:seg	UniParc:UPI0002956CAC	UniProt:M1B3E0	MapMan:27.4.5.3	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400013939]

Coordinates

chr7:+:16403921..16404924

Molecular Weight (calculated)

28587.9 Da

IEP (calculated)

5.181

GRAVY (calculated)

-0.267

Length

254 amino acids

Sequence
(BLAST)

001: MCAVGQVKIS TSDMHQSGIN DNSKCHCEVG AFVLWQKNPD QWVLELVVSG CKVSAGSNGK VAWSQSSSSS SASKGPPRPL RRFFQGLDPR STANLFSNAI
101: CFGEKTIKDE ECFILKLESS IEMLKAQSMI NTEVVHHTIW GYFSQRTGLL VQFEDTKLVR LKSTKGDSNV FWETSMESIL EDYRYIEGIN VVHSGKTAAT
201: IYRYGKNIDY RAKIEETWFI EEIDFNIFGL SMECFLPPAD VNKETEFEDQ AIAC

Best Arabidopsis Sequence Match ( AT1G75160.1 )
(BLAST)

001: MKMRKLCPNL DREDGLETVL EVPVPEEMFT KMGSNAQGRW RNMHALMKAH AVVTAVATDV RTPASSSSMS NVNMHLQSKS DNEFVALLKI VGSPLIPFHV
101: PLEFCLSRPI NDTSIEASTA KYIVQQYVAA CGGPTALNAV KSMYAVGQVR MQGSEMVAGE DEGTGTPVRL GKGSFEVGGF VLWQKNPNLW FLELVVSGFK
201: ISAGSDGKVA WNQSSTQPSQ AHRGPPRPLR RFFQGLDPRC TASLFLDAVC IGEQPVNGED CFVLKVETPS DILKAQCSPN TEVIHHTVWG YFSQRTGLLV
301: KFGDTKLVRV KSGRGKNDGV FWETSMESII DDYIFVDAVN IAHGGQTVTT LYRYGGAVNH RRRIEEKWRI EEVDFNICGL CLESFLPPSD INNDH

Arabidopsis Description

Protein of unknown function (DUF620) [Source:TAIR;Acc:AT1G75160]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.