Factsheet for PGSC0003DMT400069768

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069765	Potato	cytosol	98.51	44.59
Solyc05g052860.2.1	Tomato	cytosol	93.03	42.21
PGSC0003DMT400059652	Potato	cytosol	71.14	34.13
PGSC0003DMT400036213	Potato	cytosol	41.79	33.07
VIT_13s0019g03180.t01	Wine grape	cytosol	66.67	31.46
AT5G05840.1	Thale cress	cytosol	61.69	28.25
CDX70123	Canola	cytosol	62.19	28.22
KRH31070	Soybean	cytosol	61.19	28.21
Bra009139.1-P	Field mustard	cytosol	62.19	28.15
CDX98870	Canola	cytosol	61.69	27.93
KRH15018	Soybean	cytosol	59.2	27.87
KRG97798	Soybean	cytosol	60.2	27.56
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	51.74	27.44
Os03t0267500-01	Rice	plasma membrane	60.2	27.44
GSMUA_Achr5P28960_001	Banana	cytosol	59.2	27.29
KRH73113	Soybean	cytosol	57.21	27.12
EER95119	Sorghum	cytosol	58.21	26.41
TraesCS4B01G211300.1	Wheat	cytosol, nucleus, plastid	57.21	25.78
TraesCS4A01G093200.1	Wheat	cytosol, nucleus, plastid	57.21	25.73
TraesCS4D01G211900.1	Wheat	cytosol, nucleus, plastid	57.21	25.56
Zm00001d028565_P002	Maize	cytosol	58.21	25.43
Zm00001d047840_P001	Maize	cytosol, peroxisome, plastid	55.72	24.62
HORVU4Hr1G060590.5	Barley	mitochondrion	57.71	23.2
CDX76076	Canola	cytosol, nucleus, plastid	45.77	22.77
CDY02955	Canola	cytosol, nucleus, plastid	45.77	22.77
AT3G55720.1	Thale cress	nucleus	47.76	21.92
PGSC0003DMT400013218	Potato	cytosol	41.79	21.71
Bra014725.1-P	Field mustard	nucleus	46.27	21.63
Bra007185.1-P	Field mustard	cytosol, nucleus, plastid	46.27	21.43
CDY27272	Canola	cytosol, nucleus, plastid	46.27	21.43
PGSC0003DMT400038589	Potato	cytosol, nucleus, peroxisome	39.3	21.18
GSMUA_Achr6P33890_001	Banana	cytosol	39.8	20.89
PGSC0003DMT400066079	Potato	cytosol	36.32	20.74
PGSC0003DMT400066530	Potato	plastid	45.77	19.57
PGSC0003DMT400055468	Potato	plastid	44.28	18.94

Protein Annotations

EnsemblPlants:PGSC0003DMT400069768	EnsemblPlantsGene:PGSC0003DMG402027132	InterPro:DUF620	PANTHER:PTHR31300	PANTHER:PTHR31300:SF2	PFAM:PF04788
PGSC:PGSC0003DMG402027132	SEG:seg	UniParc:UPI000294D557	UniProt:M1CL43	MapMan:27.4.5.3	:

Description

Lipase [Source:PGSC_GENE;Acc:PGSC0003DMG402027132]

Coordinates

chr5:+:48158675..48159461

Molecular Weight (calculated)

22883.8 Da

IEP (calculated)

4.636

GRAVY (calculated)

-0.502

Length

201 amino acids

Sequence
(BLAST)

001: MFSDSICIGE KPVHGEDCFV LKFEAEPSSL KARSSSNVEI MRHTVWGYFS QRTGLLVQLE DSHLLRLKSP KDDVFWETTM ESLIQEYRTI DGVNIAHAGK
101: TCVSLFRFGE NSEGHTRTRM EEVWTIEEVD FNIKGLSLDC FLPPSDMKKD DDQEIISDDD DINKNSRLES KNITHHVNNP RFITAIKGAA KIVAIDQDSE
201: D

Best Arabidopsis Sequence Match ( AT1G49840.1 )
(BLAST)

001: MEKKQGFFSS LRDEVVRGLS PSRSRPRSRS ASPSRSTTPH MKALLWGRKK LIASSGCSGG GGVIGGERGG YYLSQPEPFI GRSSSLRPVM EGPDPDNGEV
101: SGVDSKRLGS GLSHWVKGQW SRAPSVTSTT PAYRKSDLRL LLGVMGAPLA PINVSSSSHL LHLTIRDSPT ETSSAQYILQ QYTAACGGHK LHNAIKNAYA
201: MGKLKMITSE LETPTGTVRN RNSTKSETGG FVLWQMNPDM WYVELSVGGS KVRAGCNGKL VWRHTPWLGS HTAKGPVRPL RRALQGLDPR TTATMFAESK
301: CVGERKVNGE DCFILKLCTD PETLRARSEG PAEIVRHILF GYFSQRTGLL AQIEDSQLTR IQSNDGDAVY WETTINSSLD DYKQVEGIMI AHSGRSVVTL
401: FRFGEVAMSH TRTKMEERWT IEEVAFNVPG LSLDCFIPPA DLRSGSLTEA CEYSGQEEKG KSSLALASTT AHRAKVAALE KGSFDNDPVW HIDV

Arabidopsis Description

Glutamyl-tRNA (Gln) amidotransferase subunit A (DUF620) [Source:UniProtKB/TrEMBL;Acc:Q9C6D0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.