CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007185.1-P	Field mustard	cytosol, nucleus, plastid	99.54	99.54
CDY02955	Canola	cytosol, nucleus, plastid	84.56	90.84
CDX76076	Canola	cytosol, nucleus, plastid	84.33	90.59
AT3G55720.1	Thale cress	nucleus	88.71	87.9
VIT_13s0019g03180.t01	Wine grape	cytosol	55.3	56.34
Solyc03g078650.2.1	Tomato	cytosol, nucleus, plastid	53.23	55.0
PGSC0003DMT400059652	Potato	cytosol	53.0	54.89
KRH73113	Soybean	cytosol	52.3	53.54
CDX70123	Canola	cytosol	53.92	52.82
CDX98870	Canola	cytosol	53.92	52.7
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	45.85	52.51
KRH15018	Soybean	cytosol	51.61	52.46
KRG97798	Soybean	cytosol	52.3	51.71
KRH31070	Soybean	cytosol	51.61	51.38
Solyc05g052860.2.1	Tomato	cytosol	51.84	50.79
PGSC0003DMT400069765	Potato	cytosol	51.61	50.45
CDY68684	Canola	cytosol, mitochondrion	32.95	50.0
GSMUA_Achr5P28960_001	Banana	cytosol	48.62	48.39
GSMUA_Achr6P33890_001	Banana	cytosol	42.4	48.04
CDX68146	Canola	cytosol	41.71	47.88
CDY37259	Canola	cytosol	43.32	47.47
CDY46011	Canola	cytosol	43.32	47.47
CDY30758	Canola	cytosol	40.09	47.15
CDY53851	Canola	cytosol	40.09	47.15
CDY49838	Canola	cytosol	39.63	46.61
CDY52160	Canola	cytosol	39.63	46.61
TraesCS4B01G211300.1	Wheat	cytosol, nucleus, plastid	47.7	46.41
PGSC0003DMT400069768	Potato	cytosol	21.43	46.27
TraesCS4A01G093200.1	Wheat	cytosol, nucleus, plastid	47.23	45.86
Os03t0267500-01	Rice	plasma membrane	46.31	45.58
TraesCS4D01G211900.1	Wheat	cytosol, nucleus, plastid	47.23	45.56
EER95119	Sorghum	cytosol	45.16	44.24
Zm00001d047840_P001	Maize	cytosol, peroxisome, plastid	46.08	43.96
Zm00001d028565_P002	Maize	cytosol	46.31	43.7
HORVU4Hr1G060590.5	Barley	mitochondrion	47.0	40.8
CDY50147	Canola	mitochondrion	40.09	39.64
CDX95439	Canola	mitochondrion	39.4	39.31
CDY67693	Canola	mitochondrion	39.86	38.11
CDY46168	Canola	mitochondrion	39.86	37.94
CDY03939	Canola	cytosol	10.14	37.29
CDY16530	Canola	plastid	38.71	37.17
CDY32838	Canola	plastid	38.94	37.14
CDY55767	Canola	cytosol	27.88	32.88
CDX81011	Canola	cytosol	27.88	32.88
CDX88540	Canola	mitochondrion	30.65	31.89
CDX87382	Canola	mitochondrion	30.65	31.89
CDX79318	Canola	cytosol	6.22	31.4
CDY67976	Canola	mitochondrion, plastid	36.64	31.36
CDX90103	Canola	mitochondrion, plastid	36.64	31.36

Protein Annotations

EnsemblPlants:CDY27272	EnsemblPlantsGene:GSBRNA2T00037153001	InterPro:DUF620	PANTHER:PTHR31300	PANTHER:PTHR31300:SF2	PFAM:PF04788
ProteinID:CDY27272	ProteinID:CDY27272.1	SEG:seg	UniParc:UPI0004EE05D7	UniProt:A0A078GPZ0	MapMan:27.4.5.3

Description

BnaA09g35300DBnaA09g35300D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GPZ0]

Coordinates

chrLK032201:-:535770..537638

Molecular Weight (calculated)

47730.0 Da

IEP (calculated)

5.264

GRAVY (calculated)

-0.330

Length

434 amino acids

Sequence
(BLAST)

001: MRTLCPNFDR EDGLETVLEV PMPEELFCSE NNKTGAWRSV KSSLLRSPPD NNSSPATLFG GRDAQIQMLL GIVGAPLIPL PVSSDHDVLD HPISKLIKNQ
101: SIEAAMAKYI VKQYTAAAGG ETALAGVESM YAMGKVKMGV TEFCAAKTLI GKRKKKMLKI RNVNGNGGEV GGFVLWKKGS SQWSLELVVS GCKVSAGCDG
201: NVAWKQSPWL EHSQASNEPS GPLRRFLQGL DPKTTANMFA GSVCVGEKAV NEEECFVLKL ETQPSGLKSR SKRGMETVKH TVWGCFSQRT GLLVQLEDTY
301: LVRIKTGPEE EDVVLWETTS ETMIQDYKSV DGIQIAHKGR TRVSLLRLDE SLESHSKTTM EESWEIEEVG FNVKGLSSDF FLPPGDLCAK ENEESEFSFG
401: DYTSPMMIPL KVSTDSWNLK SSKVTAIEYF GESE

Best Arabidopsis Sequence Match ( AT3G55720.1 )
(BLAST)

001: MRTLCPNFDR EDGLETVLEV PMPEELFCSD NNKSGAWRSV KSSLLRSPPD NSSSLATLFG GRDSQIQMLL GIVGAPSIPL PISSDQAKID HPISNLIKNQ
101: SIESAMAKYI VKQYTAAAGG EMALDAVESM YAMGKVKMGV TEFCAAKTLN GKRKKKMVRI RNVNNNNGNG GEMGGFVLWK KGSSQWSLEL VVSGCKVSAG
201: CDGNVDWRQS PWLAHSHASN EPSGPLRRFL QGLDPKTTAN LFAGSVCVGE KAVNNEECFV LKLETQPSGL KSRSKSGMET VKHTVWGCFG QRTGLLVQLE
301: DTYLVRIKTG LEDEDMVLWE TTSETLIQDY KSIDGIQIAH RGKTRVSLLR LDESLESHSK TTMEESWEIE EVGFNVKGLS SDFFLPPGDL CIKEEEETGF
401: SFGDYTSPML LPLKVSTTSW KIKSSKVTAI EDFGEFEG

Arabidopsis Description

Replication factor C subunit, putative (DUF620) [Source:UniProtKB/TrEMBL;Acc:Q9M050]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.