Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plasma membrane 1
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
28056797
|
msms PMID:
28056797
doi
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER95119 | Sorghum | cytosol | 89.34 | 88.94 |
| TraesCS4A01G093200.1 | Wheat | cytosol, nucleus, plastid | 87.76 | 86.58 |
| TraesCS4D01G211900.1 | Wheat | cytosol, nucleus, plastid | 87.76 | 86.0 |
| TraesCS4B01G211300.1 | Wheat | cytosol, nucleus, plastid | 86.85 | 85.87 |
| Zm00001d028565_P002 | Maize | cytosol | 89.12 | 85.43 |
| Zm00001d047840_P001 | Maize | cytosol, peroxisome, plastid | 83.45 | 80.88 |
| HORVU4Hr1G060590.5 | Barley | mitochondrion | 87.53 | 77.2 |
| GSMUA_Achr5P28960_001 | Banana | cytosol | 65.53 | 66.28 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 55.56 | 64.64 |
| GSMUA_Achr6P33890_001 | Banana | cytosol | 52.83 | 60.84 |
| PGSC0003DMT400069768 | Potato | cytosol | 27.44 | 60.2 |
| VIT_13s0019g03180.t01 | Wine grape | cytosol | 58.05 | 60.09 |
| Solyc03g078650.2.1 | Tomato | cytosol, nucleus, plastid | 55.56 | 58.33 |
| PGSC0003DMT400059652 | Potato | cytosol | 55.33 | 58.23 |
| PGSC0003DMT400069765 | Potato | cytosol | 57.82 | 57.43 |
| KRH73113 | Soybean | cytosol | 55.1 | 57.31 |
| Solyc05g052860.2.1 | Tomato | cytosol | 56.92 | 56.66 |
| KRH15018 | Soybean | cytosol | 54.65 | 56.44 |
| KRH31070 | Soybean | cytosol | 55.1 | 55.73 |
| AT5G05840.1 | Thale cress | cytosol | 54.88 | 55.13 |
| KRG97798 | Soybean | cytosol | 54.88 | 55.13 |
| CDX70123 | Canola | cytosol | 54.88 | 54.63 |
| Bra009139.1-P | Field mustard | cytosol | 54.88 | 54.5 |
| CDX98870 | Canola | cytosol | 54.65 | 54.28 |
| Os05t0252100-01 | Rice | cytosol | 52.83 | 47.75 |
| CDY27272 | Canola | cytosol, nucleus, plastid | 45.58 | 46.31 |
| Bra007185.1-P | Field mustard | cytosol, nucleus, plastid | 45.58 | 46.31 |
| Bra014725.1-P | Field mustard | nucleus | 44.44 | 45.58 |
| Os12t0581300-01 | Rice | cytosol | 16.33 | 45.57 |
| AT3G55720.1 | Thale cress | nucleus | 45.12 | 45.43 |
| CDY02955 | Canola | cytosol, nucleus, plastid | 41.5 | 45.3 |
| CDX76076 | Canola | cytosol, nucleus, plastid | 41.04 | 44.8 |
| Os03t0606100-01 | Rice | cytosol | 43.99 | 44.09 |
| Os03t0167400-00 | Rice | cytosol | 32.43 | 39.07 |
| Os07t0591100-01 | Rice | nucleus | 44.44 | 37.84 |
| Os10t0411100-00 | Rice | cytosol, peroxisome, plasma membrane | 31.29 | 30.8 |
Protein Annotations
| EMBL:AK061753 | EMBL:AK120179 | EnsemblPlants:Os03t0267500-01 | EnsemblPlantsGene:Os03g0267500 | EntrezGene:4332365 | InterPro:DUF620 |
| PANTHER:PTHR31300 | PANTHER:PTHR31300:SF2 | PFAM:PF04788 | ProteinID:ABF95159.1 | ProteinID:BAF11579.1 | ProteinID:BAS83428.1 |
| RefSeq:XP_015631386.1 | SEG:seg | UniParc:UPI0000DB4940 | UniProt:Q10NJ9 | MapMan:27.4.5.3 | : |
Description
Protein of unknown function DUF620 family protein. (Os03t0267500-01);Protein of unknown function DUF620 family protein. (Os03t0267500-02)
Coordinates
chr3:+:8851332..8854390
Molecular Weight (calculated)
47400.2 Da
IEP (calculated)
6.671
GRAVY (calculated)
-0.321
Length
441 amino acids
Sequence
(BLAST)
(BLAST)
001: MRKLCPNLER DDALDTVLEV PIPEEMFSRG SGGGGSRGSR FGCTNVKSWV RPNASDRSGG AGEPCSMSRG ELQLMLGVIG APLIPLPVDH AKQSPCSVLC
101: EQLKADPIES STAKYIIQQY IAASGGEWAL NKVTNMYAMG KVRMTAAELN SSDADGGGGG GGGHRGGKKS SKNGGEVGGF VLWQKKPELW SLELVVSGCK
201: ISAGSDGKVA WRQTPWHQSH ASRGPPRPLR RSLQGLDPML TASLFADAVC IGERSVDGED CFVLKVEAEA SSLRARNSSS VEIIRHTVWG YFSQRTGLLV
301: QLEDSHLLQI KSSGHGSVFW ETTMESHLHD YRAVDGVNIA HAGRTAVSLV RFGDSSDGNT RTRMEEVWNI EEVDFNIWGL SMDCFLPPSD LKDSKEDKDV
401: SAAVKPARPP PIRIPAVAVR VGPSQVAAVN MDDSDSLIAR S
101: EQLKADPIES STAKYIIQQY IAASGGEWAL NKVTNMYAMG KVRMTAAELN SSDADGGGGG GGGHRGGKKS SKNGGEVGGF VLWQKKPELW SLELVVSGCK
201: ISAGSDGKVA WRQTPWHQSH ASRGPPRPLR RSLQGLDPML TASLFADAVC IGERSVDGED CFVLKVEAEA SSLRARNSSS VEIIRHTVWG YFSQRTGLLV
301: QLEDSHLLQI KSSGHGSVFW ETTMESHLHD YRAVDGVNIA HAGRTAVSLV RFGDSSDGNT RTRMEEVWNI EEVDFNIWGL SMDCFLPPSD LKDSKEDKDV
401: SAAVKPARPP PIRIPAVAVR VGPSQVAAVN MDDSDSLIAR S
001: MRKLCPNYNL EDGLETVLEV PMPEELFAAS KTKPGWNQMK SYWSKPTATA TGTATATNMT RLFGGRNAEI QLLLGVVGAP LIPLPVQPDH HNDYENPIHK
101: DIKDQPLEMS MAQYIVKQYI AAVGGDRALN AVESMYAMGK VRMTASEFCT GEGSLNSKMV KARSIKSGGG EVGGFVLWQK GIELWCLELV VSGCKISAGS
201: DAKVAWRQTP WHPSHASRGP PRPLRRFLQG LDPKSTANLF ARSVCMGEKK INDEDCFILK LDAEPSALKA RSSSNVEIIR HTVWGCFSQR TGLLIQLEDS
301: HLLRIKAQDD NSIFWETTME SLIQDYRTVD GILVAHAGKS SVSLFRFGEN SDNHSRTRME ETWEIEEMDF NIKGLSMDCF LPPSDLKKDD DEEEEIECGL
401: AANNEKLPMK IRSASLRISS SKVLAIVEEE DESEVTEET
101: DIKDQPLEMS MAQYIVKQYI AAVGGDRALN AVESMYAMGK VRMTASEFCT GEGSLNSKMV KARSIKSGGG EVGGFVLWQK GIELWCLELV VSGCKISAGS
201: DAKVAWRQTP WHPSHASRGP PRPLRRFLQG LDPKSTANLF ARSVCMGEKK INDEDCFILK LDAEPSALKA RSSSNVEIIR HTVWGCFSQR TGLLIQLEDS
301: HLLRIKAQDD NSIFWETTME SLIQDYRTVD GILVAHAGKS SVSLFRFGEN SDNHSRTRME ETWEIEEMDF NIKGLSMDCF LPPSDLKKDD DEEEEIECGL
401: AANNEKLPMK IRSASLRISS SKVLAIVEEE DESEVTEET
Arabidopsis Description
Emb [Source:UniProtKB/TrEMBL;Acc:Q9FFJ4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.