CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009139.1-P	Field mustard	cytosol	99.55	99.55
CDX70123	Canola	cytosol	98.87	99.1
AT5G05840.1	Thale cress	cytosol	93.69	94.76
VIT_13s0019g03180.t01	Wine grape	cytosol	65.54	68.31
KRG97798	Soybean	cytosol	65.09	65.83
KRH31070	Soybean	cytosol	64.64	65.83
PGSC0003DMT400059652	Potato	cytosol	61.49	65.16
KRH73113	Soybean	cytosol	61.94	64.86
Solyc03g078650.2.1	Tomato	cytosol, nucleus, plastid	61.26	64.76
KRH15018	Soybean	cytosol	61.04	63.47
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	53.38	62.53
PGSC0003DMT400069768	Potato	cytosol	27.93	61.69
PGSC0003DMT400069765	Potato	cytosol	61.49	61.49
Solyc05g052860.2.1	Tomato	cytosol	61.04	61.17
GSMUA_Achr5P28960_001	Banana	cytosol	59.91	61.01
GSMUA_Achr6P33890_001	Banana	cytosol	49.77	57.7
CDY68684	Canola	cytosol, mitochondrion	36.04	55.94
Os03t0267500-01	Rice	plasma membrane	54.28	54.65
TraesCS4A01G093200.1	Wheat	cytosol, nucleus, plastid	54.95	54.59
TraesCS4B01G211300.1	Wheat	cytosol, nucleus, plastid	54.73	54.48
EER95119	Sorghum	cytosol	54.28	54.4
CDY30758	Canola	cytosol	45.05	54.2
CDY53851	Canola	cytosol	45.05	54.2
TraesCS4D01G211900.1	Wheat	cytosol, nucleus, plastid	54.73	54.0
CDY27272	Canola	cytosol, nucleus, plastid	52.7	53.92
CDY49838	Canola	cytosol	43.92	52.85
CDY52160	Canola	cytosol	43.92	52.85
CDY02955	Canola	cytosol, nucleus, plastid	47.97	52.72
Zm00001d028565_P002	Maize	cytosol	54.5	52.61
CDX76076	Canola	cytosol, nucleus, plastid	47.75	52.48
Zm00001d047840_P001	Maize	cytosol, peroxisome, plastid	53.15	51.87
CDX68146	Canola	cytosol	43.02	50.53
CDY37259	Canola	cytosol	44.14	49.49
CDY46011	Canola	cytosol	44.14	49.49
HORVU4Hr1G060590.5	Barley	mitochondrion	54.95	48.8
CDY50147	Canola	mitochondrion	40.54	41.0
CDX95439	Canola	mitochondrion	40.09	40.92
CDX79318	Canola	cytosol	7.66	39.53
CDY67693	Canola	mitochondrion	39.64	38.77
CDY46168	Canola	mitochondrion	39.41	38.38
CDY55767	Canola	cytosol	31.31	37.77
CDX81011	Canola	cytosol	31.31	37.77
CDY16530	Canola	plastid	38.06	37.39
CDY32838	Canola	plastid	38.29	37.36
CDX88540	Canola	mitochondrion	34.46	36.69
CDX87382	Canola	mitochondrion	34.46	36.69
CDY03939	Canola	cytosol	9.23	34.75
CDX90103	Canola	mitochondrion, plastid	37.61	32.94
CDY67976	Canola	mitochondrion, plastid	37.61	32.94

Protein Annotations

EnsemblPlants:CDX98870	EnsemblPlantsGene:GSBRNA2T00106973001	InterPro:DUF620	PANTHER:PTHR31300	PANTHER:PTHR31300:SF2	PFAM:PF04788
ProteinID:CDX98870	ProteinID:CDX98870.1	SEG:seg	UniParc:UPI0004EC1074	MapMan:27.4.5.3	:

Description

BnaC09g49650D

Coordinates

chrLK031907:-:374827..377641

Molecular Weight (calculated)

49758.2 Da

IEP (calculated)

4.732

GRAVY (calculated)

-0.436

Length

444 amino acids

Sequence
(BLAST)

001: MRKLCPNYNL EDGLETVLEV PMPEELFSAS KTKPGWNQMK SFWSKPTATA TATNMTRLFG GRNAEIQLLL GVVGAPLIPL PVQPDHHNDY ENPIHKDIKD
101: QPLEMSMAQY IVKQYIAAVG GERALNAIES MYAMGKVRMT ASEFCTGEGS LNSKMVKARS IRSGGGEVGG FVLWQKGIEL WCLELVVSGC KISAGSDAKV
201: AWRQTPWHPS HASRGPPRPL RRFLQGLDPK STANLFARSS CMGEKKINDE DCFILKLEAE PSTLKARSSS NVEIIRHTVW GCFSQRTGLL IQLEDSHLLR
301: IKAQEDNSIF WETTMESLIQ DYRIIDGVQV AHAGKSSVSL FRFGENSDNH SRTRMEETWE IEEMDFNIKG LCMDCFLPPS DLKKDDDEEE EEEEEVEVEC
401: GLAANNEKLP MKIRSASLKI SSSKVLAIVE EEDESDVTEE MEET

Best Arabidopsis Sequence Match ( AT5G05840.1 )
(BLAST)

001: MRKLCPNYNL EDGLETVLEV PMPEELFAAS KTKPGWNQMK SYWSKPTATA TGTATATNMT RLFGGRNAEI QLLLGVVGAP LIPLPVQPDH HNDYENPIHK
101: DIKDQPLEMS MAQYIVKQYI AAVGGDRALN AVESMYAMGK VRMTASEFCT GEGSLNSKMV KARSIKSGGG EVGGFVLWQK GIELWCLELV VSGCKISAGS
201: DAKVAWRQTP WHPSHASRGP PRPLRRFLQG LDPKSTANLF ARSVCMGEKK INDEDCFILK LDAEPSALKA RSSSNVEIIR HTVWGCFSQR TGLLIQLEDS
301: HLLRIKAQDD NSIFWETTME SLIQDYRTVD GILVAHAGKS SVSLFRFGEN SDNHSRTRME ETWEIEEMDF NIKGLSMDCF LPPSDLKKDD DEEEEIECGL
401: AANNEKLPMK IRSASLRISS SKVLAIVEEE DESEVTEET

Arabidopsis Description

Emb [Source:UniProtKB/TrEMBL;Acc:Q9FFJ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.