CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 4
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71531
CDX74062
CDY05318
CDY22376
CDY24647
CDY32973
CDY43590

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27690.1	CDX74062	AT3G07120.1	21798944
AT1G27690.1	CDY05318	AT3G07120.1	21798944
AT1G27690.1	CDY24647	AT3G07120.1	21798944
AT1G27690.1	CDX71531	AT5G42940.1	21798944
AT1G27690.1	CDY22376	AT5G42940.1	21798944
AT1G27690.1	CDY32973	AT5G42940.1	21798944
AT1G27690.1	CDY43590	AT5G42940.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90103	Canola	mitochondrion, plastid	96.06	96.06
AT1G27690.1	Thale cress	plastid	75.35	88.22
CDY03939	Canola	cytosol	20.32	87.29
GSMUA_Achr3P02230_001	Banana	cytosol, plastid	36.69	60.59
PGSC0003DMT400055468	Potato	plastid	55.03	59.36
VIT_18s0001g09450.t01	Wine grape	plastid	54.83	59.28
KRH15430	Soybean	plastid	55.23	59.2
KRH05611	Soybean	plastid	55.03	58.61
GSMUA_Achr4P14230_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	51.68	57.21
CDY50147	Canola	mitochondrion	48.72	56.26
CDY67693	Canola	mitochondrion	49.9	55.73
CDX95439	Canola	mitochondrion	47.73	55.63
CDY46168	Canola	mitochondrion	49.7	55.26
OQU79433	Sorghum	cytosol	48.72	55.01
Os03t0606100-01	Rice	cytosol	47.73	55.0
TraesCS5B01G078600.2	Wheat	cytosol	46.35	54.65
GSMUA_Achr6P24020_001	Banana	cytosol	43.2	54.61
Os12t0581300-01	Rice	cytosol	16.96	54.43
GSMUA_Achr6P16820_001	Banana	cytosol	47.34	54.42
GSMUA_Achr4P32590_001	Banana	cytosol	48.13	53.98
HORVU5Hr1G018870.3	Barley	cytosol, mitochondrion	48.92	53.91
TraesCS5A01G072300.1	Wheat	cytosol	48.92	53.56
GSMUA_Achr7P00620_001	Banana	mitochondrion	42.8	53.32
GSMUA_Achr10P...	Banana	cytosol	40.83	53.21
TraesCS4A01G237300.1	Wheat	cytosol, mitochondrion	47.93	53.17
TraesCS4B01G077800.1	Wheat	cytosol	47.93	53.17
TraesCS4D01G076200.1	Wheat	cytosol, mitochondrion	47.93	53.17
TraesCS5D01G085100.1	Wheat	cytosol	48.52	53.13
CDY16530	Canola	plastid	47.34	53.1
CDY32838	Canola	plastid	46.75	52.09
GSMUA_Achr10P...	Banana	plastid	42.41	51.31
GSMUA_Achr7P26350_001	Banana	cytosol, mitochondrion, peroxisome, plastid	48.32	51.04
EER91248	Sorghum	cytosol	46.94	50.96
Solyc04g078190.2.1	Tomato	nucleus, plastid	29.39	50.85
Zm00001d016585_P002	Maize	extracellular, plasma membrane	25.25	50.59
Zm00001d013746_P001	Maize	cytosol	45.96	50.32
Zm00001d030837_P001	Maize	cytosol, mitochondrion	47.34	50.21
GSMUA_Achr2P21540_001	Banana	plastid	43.2	50.11
OQU92347	Sorghum	mitochondrion, plastid	47.73	49.69
GSMUA_Achr2P13470_001	Banana	cytosol	42.8	49.43
TraesCS2D01G192800.1	Wheat	nucleus	49.31	49.41
TraesCS2B01G211900.1	Wheat	nucleus	49.31	49.12
TraesCS2A01G194900.1	Wheat	nucleus	49.11	49.02
Os07t0591100-01	Rice	nucleus	49.51	48.46
EER99634	Sorghum	nucleus	49.7	48.28
Zm00001d047324_P001	Maize	cytosol	45.96	47.55
HORVU4Hr1G013190.8	Barley	mitochondrion	46.75	46.93
CDX79318	Canola	cytosol	7.89	46.51
Zm00001d006749_P001	Maize	cytosol	47.53	45.82
Zm00001d022006_P001	Maize	cytosol, plastid	49.31	44.88
CDY55767	Canola	cytosol	31.16	42.93
CDX81011	Canola	cytosol	31.16	42.93
CDX88540	Canola	mitochondrion	34.71	42.21
CDX87382	Canola	mitochondrion	34.71	42.21
CDY68684	Canola	cytosol, mitochondrion	23.27	41.26
CDY53851	Canola	cytosol	28.99	39.84
CDY30758	Canola	cytosol	28.99	39.84
CDY52160	Canola	cytosol	28.8	39.57
CDY49838	Canola	cytosol	28.8	39.57
CDX70123	Canola	cytosol	32.94	37.7
CDX98870	Canola	cytosol	32.94	37.61
CDY02955	Canola	cytosol, nucleus, plastid	29.39	36.88
CDY27272	Canola	cytosol, nucleus, plastid	31.36	36.64
CDX76076	Canola	cytosol, nucleus, plastid	28.99	36.39
CDX68146	Canola	cytosol	26.82	35.98
CDY37259	Canola	cytosol	27.42	35.1
CDY46011	Canola	cytosol	27.42	35.1

Protein Annotations

EnsemblPlants:CDY67976	EnsemblPlantsGene:GSBRNA2T00068367001	GO:A0A078JQM9	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:DUF620	PANTHER:PTHR31300	PANTHER:PTHR31300:SF7	PFAM:PF04788	ProteinID:CDY67976	ProteinID:CDY67976.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EECC93	UniProt:A0A078JQM9	MapMan:5.8.2.4	MapMan:27.4.5.3

Description

BnaCnng57140DBnaCnng57140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JQM9]

Coordinates

chrLK036717:+:138..5198

Molecular Weight (calculated)

54898.8 Da

IEP (calculated)

9.243

GRAVY (calculated)

-0.275

Length

507 amino acids

Sequence
(BLAST)

001: MDKKHGLFSK SHSRRSRSKS PVRAVSPIII RRRKGRYVSQ PDRHVSEMLP PVIEGPDPDG EDSGSSGDYS RIERRWLLLG VLGAPLGPVH VSALDLLPHL
101: SIKNTPMETS SAQYILQQYT AASGGYKLHS SVQNGYVMGR IRTVASEFET GSKGSKSKSN SSKAVESGGF VLWHMSPDMW YMELVLGGSK VLAGCDGKLV
201: WRHTPWLGPH AAKGPVRPLR RALQGLDPRT TANMFASARC IGEKKIDGED CFILKLCADP ATLKARSEGA SETIRHTLFG YFSQKTGLLV HLEDSQLTRI
301: QNIGGEAVYW ETTINSYLED YKPVEGIVIA HSGRSVATLL RFGDMSSGHN TKTTMQEAWV IDEIAFNVPG LSMDCFIPPS ELRFDSHVEE LSQGPKIKTL
401: QHGSENQSNK GGVDMTKTKK IMVLSDFTGV GVGFGFGVGC GFGVGWGFGG MPLNVLGVGV GGGCGVGLGL GWGFGTAFGS HYRSSRLTFQ GVELEKDGKV
501: ENMSKNA

Best Arabidopsis Sequence Match ( AT1G27690.1 )
(BLAST)

001: MDKKHGLFSK SNSRRPRSKS PVRSVSPIII RRRKGRYVTQ PDRHMSEMLA PVIEGPDPDA EDSGSSGDYS RFERRWYNWM KCQLPVAPPS VSSSSDFKRT
101: DLRLLLGVLG APLGPVHVSA LDLLPHLSIK NTPMETSSAQ YILQQYTAAS GGQKLHSSVQ NGYVMGRIRT MASEFETGSK GSKSKNNSSK AVESGGFVLW
201: HMNPDMWYME LVLGGSKVLA GCDGKLVWRH TPWLGPHAAK GPVRPLRRAL QGLDPRTTAY MFANARCIGE KKIDGEDCFI LKLCADPATL KARSEGASET
301: IRHTLFGYFS QKTGLLVHLE DSQLTRIQNN GGEAVYWETT INSYLEDYKP VEGIMIAHSG RSVATLLRFG DMSSGHNTKT TMQEAWVIDE ISFNVPGLSI
401: DCFIPPSELR FDSHVEDLSQ GPKIRTLHGH KNG

Arabidopsis Description

Lipase, putative (DUF620) [Source:UniProtKB/TrEMBL;Acc:Q8RWY0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.